Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060785.seq
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p...    30   1.1  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    29   3.4  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    29   3.4  
At5g57710.1 68418.m07214 heat shock protein-related contains sim...    28   4.5  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.5  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   6.0  

>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
           protein annotation temporarily based on supporting cDNA
           gi|23452833|gb|AF543710.1|
          Length = 533

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 176 IFPGTVSSTFDHPFSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFP 355
           +F   VSS   +      L S    N S S   +SLP+  S  +G    +L+  E+ + P
Sbjct: 459 VFSSVVSSASTNLSKKKFLSSIHKSNSSRSTASESLPSKESKSEGISARHLLEAESAIPP 518

Query: 356 SAP 364
            +P
Sbjct: 519 LSP 521


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 457 SHYYWRSRPYASSYPPLHLGYINP--IIKSPIPYTNHPRLNIHFHQSP 594
           S Y ++S PY  S PP ++ Y +P     SP PY   P  + + ++SP
Sbjct: 125 SPYVYKSPPYVYSSPPPYV-YSSPPPYAYSPPPYAYSPPPSPYVYKSP 171


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 173 RIFPGTVSSTFDHPFSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKGYRDAY-LVNLEAVV 349
           +IFP     T DH      L+S +     NS+++ + P +  + K   +   L  L    
Sbjct: 625 KIFPSLSDLTIDHCDDLLELKSIFGITSLNSLSITNCPRILELPKNLSNVQSLERLRLYA 684

Query: 350 FPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP 448
            P   SL + V    C    D++ + V++++ P
Sbjct: 685 CPELISLPVEVCELPCLKYVDIS-QCVSLVSLP 716


>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 215 FSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKGYR 316
           FS+P +++   ++ +NSVT   +P+VSS+   +R
Sbjct: 152 FSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFR 185


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 490 SSYPPLHLGYINPIIKSPIPYTNHPRLNIHFHQSPG 597
           SS PP  +   +   K+ IP+T+ P L +    SPG
Sbjct: 895 SSLPPFRIACFDKY-KNKIPFTSVPSLEVELEASPG 929


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 275 QSLPNVSSIIKGYRDAY 325
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,303
Number of Sequences: 28952
Number of extensions: 278822
Number of successful extensions: 1046
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)