Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060784.seq
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 48 2e-06
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 44 1e-05
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 41 1e-04
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 41 1e-04
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 36 0.004
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 36 0.007
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 36 0.007
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 34 0.020
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 32 0.061
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 32 0.061
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 32 0.081
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 31 0.14
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.19
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.25
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 30 0.33
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.33
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.57
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 29 0.75
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 28 1.00
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 28 1.00
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 28 1.3
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 2.3
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 3.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 3.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 3.0
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 4.0
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 5.3
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 5.3
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 7.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 9.3
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 9.3
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 9.3
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
A+ V +P + +LA S D T +WDL+ L T+ H + YGL WSP LA
Sbjct: 283 AINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILA 342
Query: 207 DCGWDSLVHVFTPRSLRE 260
D V ++ + E
Sbjct: 343 SSSTDRRVCIWDLEKIGE 360
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAV-----SYDFTTRIWD-LKRG-CDPLETIRHHSEFTYGLAWSPL 188
V R ++ P P ++A + +Y F T D L G P ++ H+ +GL W+P
Sbjct: 134 VNRARYMPQKPEIIATMGEGGNAYIFDTTCHDALTTGEALPQAVLKGHTAEGFGLCWNPN 193
Query: 189 RPHQLADCGWDSLV 230
P LA D ++
Sbjct: 194 LPGNLATGAEDQVI 207
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR 119
G E V +++SPH +LA+ S D IWDL++
Sbjct: 323 GHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEK 357
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR-GCDPLETIRHHSEFTYGLAWSPL 188
+G + AVR ++ S + +LA SYD T+RI+D ++ C + + HSEF + WS
Sbjct: 230 SGHQLAVRSIKSSNSAHDLLATASYDMTSRIFDPEQHSC--IRKVDLHSEFVRDVDWSDF 287
Query: 189 RPHQ-LADCGWDSLVHVF 239
+A GWD ++++
Sbjct: 288 GDGSWIASVGWDESLYIW 305
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
G + + QFSP + S L S DFT R+WD P+ T++ H+ + +AW+P
Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQ-TPIATMKGHTNWVSCVAWAP 187
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCG 215
V ++P + S++A S D T R WD K+G + +R H++ L W PL H D G
Sbjct: 183 VAWAPDA-SIIATGSMDNTIRFWDPKKGSPIGDALRRHTKPIMALCWQPL--HLAPDSG 238
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRP 194
G + V FSP + A S+D + R+WD K G L T+R H Y AWS
Sbjct: 387 GHQKVVNHASFSPDGRCI-ATASFDSSVRLWDGKTG-KFLATLRGHVAAVYQCAWS-TDS 443
Query: 195 HQLADCGWDSLVHVFTPRS 251
L D+ + V+ RS
Sbjct: 444 RLLVSSSQDTTLKVWDVRS 462
Score = 25.8 bits (54), Expect = 5.3
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 81 SYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTPRSLRE 260
SYD T RIWD K G L ++ H+ L+ S H L +D F P+S +
Sbjct: 287 SYDKTIRIWDAKDG-KCLHILKGHAARVNHLSLS--TEHVLRSGAYDHT--DFKPKSFSD 341
Query: 261 GR--CSPTYNTC 290
R Y C
Sbjct: 342 ERRKAKERYEAC 353
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR-GCD-PLETIRH-----------HS 155
G E V ++ FSPH +LA+ S D T +WDL R G D P E + H+
Sbjct: 323 GHEDIVTKISFSPHEEPILASTSADRRTLVWDLSRIGEDQPAEEAQDGPPELLFMHGGHT 382
Query: 156 EFTYGLAWSPLRPHQLADCGWDSLVHVFTP 245
T + W P +A D+++ ++TP
Sbjct: 383 SCTIDMDWCPNYNWTMATAAEDNILQIWTP 412
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+ V F+PH+ +LA S D T +WDL+ L T+ H + +++SP LA
Sbjct: 284 IHSVAFNPHNDFILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKISFSPHEEPILAS 343
Query: 210 CGWD 221
D
Sbjct: 344 TSAD 347
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 36.3 bits (80), Expect = 0.004
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFT 242
S++++ D RIWDL+ G + + H +AWSP +QLA D V ++
Sbjct: 320 SLVSSGGNDAIGRIWDLRSG-KSIMVLDEHIRQIVAMAWSP-NGYQLATSSADDTVKIWD 377
Query: 243 PRSLREGRCSPTYNTCSRGLQDKTSGACIRIVTRWSSG*IK-FHQSTTKKLYSTLKHFTN 419
R + P +++ ++ SG I T G +K ++ + S + H
Sbjct: 378 LRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLWNPLNCSLIKSMVGHEEK 437
Query: 420 TLKLSIRLFRFASSSSD 470
+ + RF SS D
Sbjct: 438 VMSVDGYGDRFISSGYD 454
Score = 33.5 bits (73), Expect = 0.026
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
V RV F P S L + S+D T R+WD+ G + L HSE + +A P
Sbjct: 268 VGRVAFHP-SGDYLVSASFDTTWRLWDVHTGVELLMQ-EGHSEGIFSIACQP 317
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 30 VRRVQFSPHSPS--VLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQ- 200
+R++ SP+ LA S D T +IWDL++ TI HS + + ++
Sbjct: 349 IRQIVAMAWSPNGYQLATSSADDTVKIWDLRK-VSLAHTIPAHSSLVSDVRYIESGVNRF 407
Query: 201 LADCGWDSLVHVFTP 245
+A G+D V ++ P
Sbjct: 408 IATSGYDGCVKLWNP 422
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +3
Query: 45 FSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTY-GL--------AWSPLRPH 197
+ P S + YD T RIWD+ R LE H E ++ GL AW+P +P
Sbjct: 205 WQPDSSQIFLTTGYDSTARIWDVNRTKSQLEVFVHVPEGSHTGLSRIPVTSCAWNPAKPD 264
Query: 198 QLADCGWDSLV 230
A D +
Sbjct: 265 NFATAVLDGSI 275
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDL--KRGCDPLETIRHHSEFTYGLAWSPLRPHQ 200
AV +Q+SP +V ++ S D T RIWD+ K+ L H L+W+ P+
Sbjct: 293 AVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNL 352
Query: 201 LADCGWDSLVHVFTPRSLR 257
LA + + V+ RSL+
Sbjct: 353 LATGADNGVWSVWDLRSLK 371
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPL 188
+G + V + SP +P + A+VS+D T R+WD++ + TI +E T G W L
Sbjct: 352 SGHKNLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTI-SRAEKT-GSQWDKL 408
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 32.3 bits (70), Expect = 0.061
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
V QF P++ + + S D T ++WDL G + + H ++ +W + +L
Sbjct: 126 VHVTQFCPYANTTFLSGSDDKTVKVWDLSTGAVQYD-LSGHEDYVRTASW--MSATRLVS 182
Query: 210 CGWDSLVHVFTPR 248
G+D + ++ R
Sbjct: 183 GGYDGTIRLWDTR 195
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 32.3 bits (70), Expect = 0.061
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQL-- 203
V V SP + V++ S D T +IW++ C T HS++ + +SP P L
Sbjct: 108 VLSVSISPDNRQVVSG-SRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSP-NPDNLTF 165
Query: 204 ADCGWDSLVHVF 239
GWD V V+
Sbjct: 166 VSAGWDKAVKVW 177
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 75 AVSYDFTTRIWDLKRGCDPLETIRHHSE 158
+ S+D T R+WDL++G + + H S+
Sbjct: 80 SASWDKTIRLWDLEKGECTHQFVGHTSD 107
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 31.9 bits (69), Expect = 0.081
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKR-----GCDPL--------ETIRHHSEFTYG 170
V V + P + VLA+ S D T R+WD+++ C L +T H G
Sbjct: 192 VLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNG 251
Query: 171 LAWSPLRPHQLADCGWDSLVHVFTPRSLR 257
LAW+ LA CG D + V+ S R
Sbjct: 252 LAWTS-DARYLASCGTDDRIRVWNMESGR 279
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 51 PHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQL 203
P + + S+D T ++WD+ T + Y AWSP+ H L
Sbjct: 113 PFDNGIFTSSSFDHTLKVWDVST-LQEAYTFT-MEDMIYSHAWSPIASHCL 161
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
AV + + +P VLA S D + WDL+ P+ + + W+ PH LA
Sbjct: 324 AVTDMNWHRQNPDVLATCSIDSSVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILA 383
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRG 122
VQ+ P + +VLA+ S D T ++WD ++G
Sbjct: 140 VQYHPTAANVLASSSADNTIKLWDCEKG 167
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRI---WDLKRGCDPLETIRHHSEFTYGLAWSPLRPH 197
AV + + P++ + LA D I WDL++ P + H + L+W P P
Sbjct: 215 AVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCPEDPT 274
Query: 198 QLADCGWDSLVHVF 239
L G D V+
Sbjct: 275 FLLSSGKDGRAMVW 288
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHS 155
V F P++ + LA S D TTR+WD++ G HHS
Sbjct: 493 VSFHPNA-AYLATGSSDHTTRMWDVRTGGTVRVFNAHHS 530
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHH 152
AG + VQFSP A S+D T R+WD++ PL H
Sbjct: 442 AGHNAPIWDVQFSPFG-YYFATASHDQTARLWDVEHAA-PLRVFVGH 486
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 66 VLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTP 245
++ + SYD T R+W G L +R H Y + +P R Q G D+ + ++
Sbjct: 589 LIVSASYDGTLRVWKASTGV-CLHVLRGHVGRVYSVTINPSR-QQCISAGTDAKIRIWNL 646
Query: 246 RS 251
S
Sbjct: 647 ES 648
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
A R V FSP P+ A + WD++ P + H+ + +SP LA
Sbjct: 179 AARDVVFSPSEPNEFVAAYDSGILQKWDIRFPKLPFLKLAAHNGVVLCVNYSP-NGVFLA 237
Query: 207 DCGWDSLVHVFTPRS 251
CG D + ++ S
Sbjct: 238 SCGRDKTIRIWDSTS 252
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.7 bits (61), Expect = 0.75
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDL 113
AG E V + F+ S S+LA+ S+D T RIWD+
Sbjct: 464 AGHEGPVSSLSFNS-SGSLLASGSWDKTVRIWDI 496
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 1.00
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 66 VLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLR 191
+L + SYD + RIW + G + L +R HS Y + + P R
Sbjct: 519 ILVSGSYDSSIRIWRVSTG-ECLYHLRGHSLRIYSVLYEPER 559
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRG-CDPLETIRHHSEFTYGLAWSP 185
VQ+ P +L + YD T R W+ G C TI+H L SP
Sbjct: 3 VQYPPQHSVLLVSSGYDHTIRFWEALSGICS--RTIQHADSQVNRLCISP 50
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 138 TIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 239
++R HS+F Y + +SP + A G D V+VF
Sbjct: 184 SLRVHSKFVYDVRYSP-NDERFASAGADGKVYVF 216
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 267 CSPTYNT--CSRGLQDKTSGACIRIVTR 344
CSP T C G+QDKTSG + TR
Sbjct: 397 CSPDGATLACGGGVQDKTSGVVVFDTTR 424
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 169 PYVNSEWCRIVSKGSQPRFRSQILVVKSYETAANTEGECGE 47
P + E C ++ G++P +S + KS++ G CGE
Sbjct: 330 PILKPEVCILLDAGTRPGDQSIYHLWKSFDLNPQVAGACGE 370
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 21 ECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
E V + SP+ +A S D R+W + +E + H E Y +A+SP
Sbjct: 443 ENGVTAIAISPND-QFIAVGSLDQIIRVWSVSGTL--VERLEGHKESVYSIAFSP 494
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V + F+P ++L + S+D T RIW+L+ G L + HSE
Sbjct: 141 VSSIDFNPLG-TLLVSGSWDETVRIWNLQDG-TCLRMLPAHSE 181
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETI 143
VR V+ SP +LA S+D T + WDL++ P+ T+
Sbjct: 121 VRFVEAMGTSP-ILATGSWDKTLKYWDLRQS-TPIATV 156
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWD-LKRGCDPLETIRHHSEFTYGLAWSPLRPHQL 203
++RRV + P VLA S+D I + + + + H +AWS + L
Sbjct: 335 SIRRVAWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWS-CNGNYL 393
Query: 204 ADCGWDSLVHVF 239
A C D V ++
Sbjct: 394 ATCSRDKSVWIW 405
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 69 LAAVSYDFTTRIWDLKRGCDPL-ETIRHHSEFTYGLAWS-PLRPHQLADCGWDSLVHVF 239
LA S D T +++ ++ L ET+R HS + L W+ P LA +D V V+
Sbjct: 24 LATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW 82
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 378 TTKKLYSTLKHFTNTLKLSIRLFR 449
T K+ TLKH + KL +R+FR
Sbjct: 240 TNKRGLYTLKHVVDKSKLDVRIFR 263
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 81 SYDFTTRIWDLKRGCDPLETI 143
SYD + RIWDL+ G P+ I
Sbjct: 553 SYDNSVRIWDLRSG-SPINII 572
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDL 113
++LA+ SYD T R+W+L
Sbjct: 284 NILASGSYDATIRLWNL 300
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 212 AVGELVRAQRAPRQPVRELRVVPDR 138
A GELVRA V + R+ PDR
Sbjct: 53 AAGELVRAAEFQSSEVPKARIQPDR 77
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 176 RQPVRELRVVPDRLQGVAAALQVPDSRGKVVRDGGQH 66
R ++EL + + +QG+ L+ PD + +D GQ+
Sbjct: 90 RSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQN 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,030
Number of Sequences: 5004
Number of extensions: 45186
Number of successful extensions: 185
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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