Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060784.seq
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 60 9e-10
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 43 2e-04
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 43 2e-04
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 43 2e-04
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 42 5e-04
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 41 6e-04
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 41 8e-04
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 40 0.002
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 40 0.002
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 39 0.002
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 38 0.004
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 38 0.004
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 38 0.004
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 38 0.004
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 38 0.004
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 38 0.006
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 37 0.013
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 36 0.017
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 36 0.030
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 36 0.030
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 35 0.040
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.21
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 32 0.28
At1g04390.1 68414.m00429 expressed protein 32 0.28
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 32 0.37
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 31 0.49
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.49
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.49
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.49
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.49
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.49
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 31 0.65
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 31 0.86
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.1
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 30 1.1
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 30 1.5
At3g46930.1 68416.m05093 protein kinase family protein contains ... 30 1.5
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 30 1.5
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 30 1.5
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 30 1.5
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 30 1.5
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 30 1.5
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 29 2.6
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 2.6
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 2.6
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 29 2.6
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 29 2.6
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 29 3.5
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 3.5
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 29 3.5
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 29 3.5
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 29 3.5
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 3.5
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 28 4.6
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff... 28 4.6
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff... 28 6.1
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 28 6.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 28 6.1
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 28 6.1
At2g40070.1 68415.m04923 expressed protein 28 6.1
At5g15710.1 68418.m01837 F-box family protein unusual floral org... 27 8.0
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 27 8.0
At2g39490.1 68415.m04846 F-box family protein ; similar to SKP1... 27 8.0
At1g23710.1 68414.m02993 expressed protein 27 8.0
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 27 8.0
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 27 8.0
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 27 8.0
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 60.5 bits (140), Expect = 9e-10
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
AVR+V+FSPH S++A+ SYD + +WD + HH+EF G+ S L +A
Sbjct: 238 AVRKVKFSPHRRSLIASCSYDMSVCLWDYMVEDALVGRYDHHTEFAVGIDMSVLVEGLMA 297
Query: 207 DCGWDSLVHVF 239
GWD LV+V+
Sbjct: 298 STGWDELVYVW 308
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 45 FSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDS 224
++ + +LA S D T ++WD++ PL + H + +SP R +A C +D
Sbjct: 200 WNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDM 259
Query: 225 LV 230
V
Sbjct: 260 SV 261
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
V+ V ++P S+D T ++W + R + T + H+ Y W+P A
Sbjct: 109 VQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPAS-VRTFKEHAYCVYQAVWNPKHGDVFAS 167
Query: 210 CGWDSLVHVFTPR 248
D + ++ R
Sbjct: 168 ASGDCTLRIWDVR 180
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/77 (40%), Positives = 37/77 (48%)
Frame = +3
Query: 36 RVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCG 215
RV F P S L SYD T R+WD+ G + L HS YG+A+ A CG
Sbjct: 344 RVAFHP-SGKYLGTTSYDKTWRLWDINTGAE-LLLQEGHSRSVYGIAFQQ-DGALAASCG 400
Query: 216 WDSLVHVFTPRSLREGR 266
DSL V+ LR GR
Sbjct: 401 LDSLARVW---DLRTGR 414
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLR 191
AG C +V FSP V++ + WD K C T++ H+ G W PL
Sbjct: 502 AGYAC---QVNFSPDGRFVMSGDG-EGKCWFWDWK-SCKVFRTLKCHNGVCIGAEWHPLE 556
Query: 192 PHQLADCGWDSLV 230
++A CGWD L+
Sbjct: 557 QSKVATCGWDGLI 569
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 48 SPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSL 227
+P+ LA+ S+D T ++WD + G L + H E Y LA+SP +A D
Sbjct: 507 NPNKQLTLASASFDSTVKLWDAELG-KMLCSFNGHREPVYSLAFSP-NGEYIASGSLDKS 564
Query: 228 VHVFTPRSLREGRCSPTY 281
+H++ S++EG+ TY
Sbjct: 565 IHIW---SIKEGKIVKTY 579
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRP 194
G + V V++ P + S+LA+ S D T +IW++K+ + +R H++ Y + WSP P
Sbjct: 446 GHQGEVNCVKWDP-TGSLLASCSDDSTAKIWNIKQSTF-VHDLREHTKEIYTIRWSPTGP 503
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
+V V+F+P P++LA + D + I+DL+ + I T +AW+P+ P L
Sbjct: 195 SVISVRFNPGEPNLLATSASDRSITIYDLRLSSAARKIIMMTK--TNSIAWNPMEPMNLT 252
Query: 207 DCGWDSLVHVFTPRSLREGRC 269
D + F R L E +C
Sbjct: 253 AANEDGSCYSFDGRKLDEAKC 273
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGW 218
++FSP S LA S+D T R+WD L T HS L + P++ + C
Sbjct: 699 IRFSP-SQLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDN 757
Query: 219 DSLVHVFTPRSLREGRCSPTY 281
D+ + + S+ G C+ Y
Sbjct: 758 DNEIRYW---SINNGSCTRVY 775
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLR 191
AG +V +Q+SP +V A+ S D + +WD++ G P + + H+ ++W+ L
Sbjct: 266 AGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISWNRLA 325
Query: 192 PHQLADCGWDSLVHVFTPRSLREG 263
LA D + R ++ G
Sbjct: 326 SCMLASGSDDGTFSIRDLRLIKGG 349
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 129 PLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTPRS 251
PL H + Y + WSP +L S++H++ P S
Sbjct: 215 PLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS 255
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
V R F S +A+ S D IW+LK PLE + HS ++W+P P LA
Sbjct: 445 VIRSCFGGLDSSFIASGSEDSQVYIWNLKN-TKPLEVLSGHSMTVNCVSWNPKNPRMLAS 503
Query: 210 CGWDSLVHVFTP 245
D + ++ P
Sbjct: 504 ASDDQTIRIWGP 515
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R + +S S +L D T +WD + ++ HS T G+ +SP +A
Sbjct: 181 LRLLDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIAS 240
Query: 210 CGWDSLVHVFTPRSLREGRCSPTYNTCSRGLQDKTSGACIRIVTRWSSG*IKFHQSTTKK 389
G D ++ + S R C Y L +G +V S+G + F+ K
Sbjct: 241 VGMDKKLYTYDSGSRRSSSCI-AYEAPFSSLAFGDNGYI--LVAGTSNGRVVFYDIRGKP 297
Query: 390 LYSTLKH-FTNT 422
T+ H F+N+
Sbjct: 298 QPVTVLHAFSNS 309
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 21 ECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQ 200
E + + F+P + VLA S D T ++DL++ PL + H + + W P
Sbjct: 261 EREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETV 320
Query: 201 LADCGWDSLVHVF 239
LA G D + V+
Sbjct: 321 LASSGEDRRLMVW 333
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKR--------GCDPLETIRHHSEFTYGLAWSP 185
V R + P P+++ A + ++D R CDP + H + YGLAWS
Sbjct: 120 VNRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSS 179
Query: 186 LRPHQLADCGWDSLV 230
+ L D +
Sbjct: 180 FKEGYLLSGSQDQRI 194
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
V + F+P + V+A S D T +++DL++ L T H E + + W+P LA
Sbjct: 276 VNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWNPKNETILAS 335
Query: 210 C 212
C
Sbjct: 336 C 336
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKR---------GCDPLETIRHHSEFTYGLAWS 182
V R ++ P +P ++A + + ++D + C+P +R HS YGL+WS
Sbjct: 128 VNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWS 187
Query: 183 PLRPHQL 203
+ L
Sbjct: 188 KFKQGHL 194
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETI-RHHSEFTYGLAWSPLR 191
G E V V FSP S +V D +WD + G +P+ + + H + + W+P
Sbjct: 290 GHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHD 349
Query: 192 PHQLADCGWDSLVHVFTPRSL-REGRCSPTY 281
+ + D+ V +F R L G SP Y
Sbjct: 350 DNLILTGSADNTVRLFDRRKLTANGVGSPIY 380
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 21 ECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQ 200
E V + F+P + VLA S D T ++DL++ PL + H + + W P
Sbjct: 260 EREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETV 319
Query: 201 LADCGWDSLVHVF 239
LA G D + V+
Sbjct: 320 LASSGEDRRLMVW 332
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 123 CDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLV 230
CDP + H + YGL+WSP + L D +
Sbjct: 158 CDPDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKI 193
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
+G E V + FSP + +LA+ S+D+T R+WD+ +ET RH+ +
Sbjct: 474 SGHEAPVHGLMFSPLT-QLLASSSWDYTVRLWDVFASKGTVETFRHNHD 521
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
+G E V + FSP + +LA+ S+D+T R+WD+ +ET RH+ +
Sbjct: 514 SGHEAPVHGLMFSPLT-QLLASSSWDYTVRLWDVFASKGTVETFRHNHD 561
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
VR V ++P +L + +WDL++ P++ + H+ +T+ + +P +
Sbjct: 211 VRGVDYNPKREHILVTAEDESGIHVWDLRKAKVPVQELPGHTHWTWAVRCNPEYDGLILS 270
Query: 210 CGWDSLVHVF 239
G DS+V+++
Sbjct: 271 AGTDSVVNLW 280
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 36.7 bits (81), Expect = 0.013
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +3
Query: 21 ECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLK-RGCDPLETIR--HHSEFTYGLAWSPLR 191
E + + F+P +P V+A S D T +WDL+ G +T+ +HS + +SP
Sbjct: 348 ERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHSAYFSP-S 406
Query: 192 PHQLADCGWDSLVHVFTPRSLREGRCSPTYNTCSR 296
LA D+ + V + + E C +N SR
Sbjct: 407 GLSLATTSLDNYIGVLSGANF-ENTCMIYHNNTSR 440
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDP-LETIRHHSEFTYGLAWSPLR 191
G + V V F P S +V D +WD + G P ++ + H + + W+P
Sbjct: 279 GHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHD 338
Query: 192 PHQLADCGWDSLVHVFTPRSL-REGRCSPTY 281
+ + D+ V VF R+L G SP Y
Sbjct: 339 NNLILTGSADNTVRVFDRRNLTSNGVGSPVY 369
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLV 230
++LA+ S D ++WD+ G + T+ HH++ +AW+ P L +D V
Sbjct: 279 NILASASADKKVKVWDVATGTCKI-TMEHHTKEVQAVAWNHYAPEVLLSGSFDQTV 333
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLV 230
++LA+ S D ++WD+ G + T+ HH++ +AW+ P L +D V
Sbjct: 247 NILASASADKKVKVWDVATGTCKI-TMEHHTKEVQAVAWNHYAPEVLLSGSFDQTV 301
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 35.1 bits (77), Expect = 0.040
Identities = 19/89 (21%), Positives = 42/89 (47%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
VR V ++ +L + + +WDL++ P++ + H+ +T+ + +P +
Sbjct: 211 VRNVDYNLKREHILVSADDESGIHLWDLRKTKFPVQELPGHTHWTWAVRCNPEYEELILS 270
Query: 210 CGWDSLVHVFTPRSLREGRCSPTYNTCSR 296
G DS V+++ + E + S + SR
Sbjct: 271 VGTDSAVNLWFASASSEHKTSESPVEASR 299
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 99 RIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTPRSL 254
++ D G + ++ + H++ + +AW+P +A C D V ++ SL
Sbjct: 2 KVMDKNLGLEEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSL 53
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKR 119
V+FS HSP + A S+D ++WDL++
Sbjct: 589 VKFSNHSPFLFATSSFDKDVKLWDLRQ 615
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 613 LECLRSYNAIYYQMVETTTRDVWNILDXSRDVVSA*KRLQ 494
L C + NAI + ET ++VW IL+ + VVS LQ
Sbjct: 136 LPCAVALNAILVNVRETKEKEVWKILEDEKTVVSVVGNLQ 175
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRP--HQLADCGWDSLVHV 236
+++A+ S DF R+W L G P+ +R H+ +A+SP + +QL D +
Sbjct: 360 ALVASASNDFVIRVWRLPDGM-PISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRI 418
Query: 237 FTPR 248
+ R
Sbjct: 419 WDAR 422
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 45 FSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDS 224
F+ + +++A+ S D ++WD+ G + T+ HH + + +AW+ P L D
Sbjct: 222 FNWENRNIVASGSEDKKVKVWDVATGKCKV-TMEHHEKKVHAVAWNNYTPEVLLSGSRDR 280
Query: 225 LV 230
V
Sbjct: 281 TV 282
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDL 113
V + ++ H+P++LA S D + ++WDL
Sbjct: 348 VSSISYNIHAPNLLATGSADESVKLWDL 375
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
V+F P+S LA S+D T +IWD L TI H+ + + P + L C
Sbjct: 556 VRFRPNSTQ-LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSC 612
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
A +V+F P + LAA S + T I+D++ + + HS + + WSP
Sbjct: 634 ASTQVRFQPRTGQFLAAASEN-TVSIFDIENNNKRVNIFKGHSSNVHSVCWSP 685
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
V+F P+S LA S+D T +IWD L TI H+ + + P + L C
Sbjct: 558 VRFRPNSTQ-LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSC 614
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
A +V+F P + LAA S + T I+D++ + + HS + + WSP
Sbjct: 636 ASTQVRFQPRTGQFLAAASEN-TVSIFDIENNNKRVNIFKGHSSNVHSVCWSP 687
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
V+F P+S LA S+D T +IWD L TI H+ + + P + L C
Sbjct: 558 VRFRPNSTQ-LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSC 614
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
A +V+F P + LAA S + T I+D++ + + HS + + WSP
Sbjct: 636 ASTQVRFQPRTGQFLAAASEN-TVSIFDIENNNKRVNIFKGHSSNVHSVCWSP 687
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
V+F P+S LA S+D T +IWD L TI H+ + + P + L C
Sbjct: 558 VRFRPNSTQ-LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSC 614
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
A +V+F P + LAA S + T I+D++ + + HS + + WSP
Sbjct: 636 ASTQVRFQPRTGQFLAAASEN-TVSIFDIENNNKRVNIFKGHSSNVHSVCWSP 687
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
V+F P+S LA S+D T +IWD L TI H+ + + P + L C
Sbjct: 558 VRFRPNSTQ-LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSC 614
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
A +V+F P + LAA S + T I+D++ + + HS + + WSP
Sbjct: 636 ASTQVRFQPRTGQFLAAASEN-TVSIFDIENNNKRVNIFKGHSSNVHSVCWSP 687
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 239
++L + S D T R+W + GCD + HH+ + + ++P+ + A D ++
Sbjct: 284 NLLLSASKDKTVRLW--RTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIW 340
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R V P P VL++ S D ++WD ++G + HS + + ++P + A
Sbjct: 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFAS 160
Query: 210 CGWDSLVHVF 239
D + ++
Sbjct: 161 ASLDRTIKIW 170
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V +V F+P + A+ S D T +IW+L DP T+ H +
Sbjct: 145 VMQVTFNPKDTNTFASASLDRTIKIWNL-GSPDPNFTLDAHQK 186
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = -3
Query: 301 RPRLHVLYV---GEHRPSRSERGVNTCTS-ESQP-QSASWCGRSGLHASPYVNSEWCRIV 137
+PRL +L + GE S GV S S P Q SW R+ ++ + +E C+ +
Sbjct: 44 KPRLRMLDMVENGEEEASSMPHGVTGEESIGSIPFQVLSWRPRA-IYFPNFATAEQCQAI 102
Query: 136 SKGSQPRFRSQILVVKSYETAANTEG 59
+ ++ + L ++ ETA NT+G
Sbjct: 103 IERAKVNLKPSALALRKGETAENTKG 128
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
V V SP ++ A S D T R+WDLK ++T+ +H++ + +A+ P
Sbjct: 246 VLSVDASPDGGAI-ATGSSDRTVRLWDLKMRA-AIQTMSNHNDQVWSVAFRP 295
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
+G + V V P P V+ S+D T + WDL+ G + T+ HH + + P
Sbjct: 299 SGHDNTVCSVFTRPTDPQVVTG-SHDTTIKFWDLRYG-KTMSTLTHHKKSVRAMTLHP 354
>At3g46930.1 68416.m05093 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 475
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 84 YDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
Y F +W++ G P E ++ + Y + + +RP DC
Sbjct: 344 YSFGLLLWEMVAGALPYEEMKFAEQIAYAVIYKKIRPVIPTDC 386
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R V P P VL++ S D ++WD + G + HS + + ++P + A
Sbjct: 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 210 CGWDSLVHVF 239
D + ++
Sbjct: 161 ASLDRTIKIW 170
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V +V F+P + A+ S D T +IW+L DP T+ H +
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNL-GSPDPNFTLDAHQK 186
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R V P P VL++ S D ++WD + G + HS + + ++P + A
Sbjct: 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 210 CGWDSLVHVF 239
D + ++
Sbjct: 161 ASLDRTIKIW 170
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V +V F+P + A+ S D T +IW+L DP T+ H +
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNL-GSPDPNFTLDAHQK 186
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R V P P VL++ S D ++WD + G + HS + + ++P + A
Sbjct: 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFAS 160
Query: 210 CGWDSLVHVF 239
D + ++
Sbjct: 161 ASLDRTIKIW 170
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V +V F+P + A+ S D T +IW+L DP T+ H +
Sbjct: 145 VMQVVFNPKDTNTFASASLDRTIKIWNL-GSPDPNFTLDAHQK 186
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 12 AGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHS 155
+G + AV V+F S + LA+ S D T R+WD+K P+ T R H+
Sbjct: 546 SGHKKAVSYVKFL--SNNELASASTDSTLRLWDVKDNL-PVRTFRGHT 590
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLAD 209
+R V P P VL++ S D ++WD ++G + HS + + ++P + A
Sbjct: 102 IRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFAS 160
Query: 210 CGWDSLVHVF 239
D + ++
Sbjct: 161 ASLDRTIKIW 170
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHH 152
V +V F+P + A+ S D T +IW+L DP T+ H
Sbjct: 145 VMQVTFNPKDTNTFASASLDRTIKIWNL-GSPDPNFTLDAH 184
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
VQFSP S +LA S DF T +DL+ P + H++
Sbjct: 844 VQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNK 883
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 51 PHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSP 185
P P V+ S+D T + WDL+ G + TI +H + +A P
Sbjct: 305 PTDPQVITG-SHDSTIKFWDLRYG-KSMATITNHKKTVRAMALHP 347
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 150 HSEFTYGLAWSPLRPHQLADCGWDSLVHVF 239
HS A+ P RP ++A CG D LV+ +
Sbjct: 7 HSRRVLSCAFKPTRPFRIATCGEDFLVNFY 36
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 63 SVLAAVSYDFTTRIWDLKRGCDPLETIRH-HSE 158
++LA SYD T +WD+ R P + +R+ H+E
Sbjct: 1059 TILATGSYDTTVMVWDILRMRTPEKRVRNTHAE 1091
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSEFTY----GLAWSPLRPH 197
VR ++F+ SP+ LA+ + D T IWDL P ++ + L+W+ H
Sbjct: 118 VRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHYLKGTGSYMQSEISSLSWNKGFQH 177
Query: 198 QLA 206
LA
Sbjct: 178 VLA 180
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 RGAG-CECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
R AG C AV V+F P +A D ++D+++ DP T++ H++
Sbjct: 63 RPAGICRSAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTK 114
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 27 AVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR 119
AV V +SP + +LA+ S D T RIW L R
Sbjct: 533 AVNCVSWSPTNLHMLASASDDGTIRIWGLDR 563
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 CAVRRVQFSPHSPSVLAAVSYDF---TTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRP 194
C+V +Q++P+ + + S D T ++WD++ P+ H + W P
Sbjct: 219 CSV--LQWNPNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDS 276
Query: 195 HQLADCGWDS 224
L C D+
Sbjct: 277 SYLLTCAKDN 286
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 9 GAGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR 119
G+ + + + ++ +LA+ SY+ TT IWDL++
Sbjct: 168 GSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRK 204
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 24 CAVRRVQFSPHSPSVLAAVSYDF---TTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRP 194
C+V +Q++P+ + + S D T ++WD++ P+ H + W P
Sbjct: 219 CSV--LQWNPNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDS 276
Query: 195 HQLADCGWDS 224
L C D+
Sbjct: 277 SYLLTCAKDN 286
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 9 GAGCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKR 119
G+ + + + ++ +LA+ SY+ TT IWDL++
Sbjct: 168 GSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRK 204
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
V F+P S +++ S+D T RIWD+ G L+ + HS+
Sbjct: 119 VNFNPQSNMIVSG-SFDETVRIWDVTTG-KCLKVLPAHSD 156
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIW-DLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLA 206
VR +SP S +LA S+D TT IW + + + T+ H ++W+ LA
Sbjct: 77 VRSCAWSP-SGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWN-ASGSCLA 134
Query: 207 DCGWDSLVHVFTPRSLREGRCS 272
C D V ++ E C+
Sbjct: 135 TCSRDKSVWIWEVLEGNEYDCA 156
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHSE 158
G A+ V+F P S +A D ++D++R DPL + H++
Sbjct: 210 GGGAAICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPLIVLDGHTK 257
>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 839
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 449 FRFEQF-RLLTDCVPSLQXLLSRYHISRXIEN 541
FRF+ F RL DC+ +L+ L R+ I +EN
Sbjct: 464 FRFDCFKRLSVDCLKALRLLPKRFEIPDMLEN 495
>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 676
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 449 FRFEQF-RLLTDCVPSLQXLLSRYHISRXIEN 541
FRF+ F RL DC+ +L+ L R+ I +EN
Sbjct: 301 FRFDCFKRLSDDCLKALRLLPKRFEIPDMLEN 332
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHHS 155
V F+P S +++ + S+D T RIW++K G + I+ HS
Sbjct: 134 VNFNPPS-NLIVSGSFDETIRIWEVKTG-KCVRMIKAHS 170
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 15 GCECAVRRVQFSPHSPSVLAAVSYDFTTRIWDLK 116
G + V V +SP +A S DFT R+W+++
Sbjct: 379 GHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIE 412
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 30 VRRVQFSPHSPSVLAAVSYDFTTRIWDLK 116
VR SP + S+L SYD T ++WD +
Sbjct: 181 VRCGDCSPVNDSMLVTGSYDHTVKVWDAR 209
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 149 VPDR-LQGVAAALQVPDSRGKVVRDGGQHGGRVRRELHPPHSTLAPCTS 6
+P+R L P SR V GG GGR RR+ P AP S
Sbjct: 391 LPERPLSATRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAPMYS 439
>At5g15710.1 68418.m01837 F-box family protein unusual floral organs
protein UFO - Arabidopsis thaliana, PIR:S57710
Length = 448
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 588 PSIIRWWKLL--LEMCGIFSIXLEMWYRL 508
P ++ +WK + C +FS+ L+ WY++
Sbjct: 155 PCLLTFWKNSPQIPQCSVFSLPLKTWYKI 183
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 60 PSV-LAAVSYDFTTRIWDLKRG-CDPLETIRHHSEFTYGLAWSPLRPHQLADC 212
PSV LA SYD T R W+ + G C TI++ L +P + + A C
Sbjct: 4 PSVILATASYDHTIRFWEAETGRC--YRTIQYPDSHVNRLEITPDKHYLAAAC 54
>At2g39490.1 68415.m04846 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 387
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 325 HAPDVLSCRPRLHVLYVGEHRPSRSER 245
H PD+LSC P +LY+ P S R
Sbjct: 4 HKPDILSCLPLELLLYIISFLPFESAR 30
>At1g23710.1 68414.m02993 expressed protein
Length = 295
Score = 27.5 bits (58), Expect = 8.0
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -3
Query: 301 RPRLHVLYVGEHRPSRSERGVNTCTSESQPQS--ASWCGRSGLHASPYVNSEWCR-IVSK 131
RPRL L+V E R + G T SE +P SW G + ASP E CR S
Sbjct: 120 RPRLRKLFV-EDRNGNGD-GEETEGSEKEPLGPYCSWTGGTVAEASP----ETCRKSNST 173
Query: 130 GSQPRFRSQILVVKS 86
G +R + LV++S
Sbjct: 174 GFSKLWRFRDLVLRS 188
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 72 AAVSYDFTTRIWDLKRGCDPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 239
A+ S DFT +IW+ G D L + H A+S H+L G + ++ +F
Sbjct: 72 ASASADFTAKIWNALTG-DELHSF-EHKHIVRACAFSE-DTHRLLTGGMEKILRIF 124
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHH 152
V+F P ++A+ S D R+W+ K G E IR H
Sbjct: 151 VRFHPRHSEIVASGSLDHEVRLWNAKTG----ECIRTH 184
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 39 VQFSPHSPSVLAAVSYDFTTRIWDLKRGCDPLETIRHH 152
V+F P ++A+ S D R+W+ K G E IR H
Sbjct: 151 VRFHPRHSEIVASGSLDHEVRLWNAKTG----ECIRTH 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,256
Number of Sequences: 28952
Number of extensions: 252750
Number of successful extensions: 916
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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