Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060782.seq
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    71   9e-14
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    28   1.1  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    26   3.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   4.5  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    26   4.5  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.0  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   7.9  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    25   7.9  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    25   7.9  

>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 38/88 (43%), Positives = 51/88 (57%)
 Frame = +3

Query: 255 RLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPK 434
           R  LP    VLGLPIGQH+ +   ++     R+YTP+SSD DKGY DL++K Y       
Sbjct: 80  RFRLPRANDVLGLPIGQHLKVFVDVDGKEYSRSYTPLSSDADKGYFDLLVKSY------- 132

Query: 435 FPEGGKLSQYLNNMKINDTIDVRXTSGD 518
               GK+S+  + +KI DTI VR   G+
Sbjct: 133 --PNGKVSKKFSELKIGDTIGVRGPKGN 158


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 203 YFTLESTNVINFLLDPLDFF-PHRQLAIIVAKTTTDPTPNIIGSTILELIV 54
           YF+L + ++ N L   + FF P+    I+ AK     T  IIG TI  +++
Sbjct: 268 YFSLRTRSLNNVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVI 318


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 279 VEETAVPA*SPGVMTDFFP 223
           V+E  +P+ SP  +TDFFP
Sbjct: 326 VKEINIPSSSPAYITDFFP 344


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 426 HPKFPEGGKLSQYLNNMKINDTIDVRXTSGDCSTQ 530
           H  +PE G +  YLN   + + + V      C+T+
Sbjct: 849 HLCYPETGAIESYLNQEFVQEALGVEYDYKGCNTE 883


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 422 ILKVYLDNQIDIAFILIARHR 360
           I+K YL+  I++A +L+ +HR
Sbjct: 126 IIKGYLEKAIELATVLVIKHR 146


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 LDPLDFFPHRQLAIIVAKTTTDPTP 90
           LDP  +F +R   I+  + T DP P
Sbjct: 70  LDPSQYFENRSRTIMELRQTKDPNP 94


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 330 NDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHP-KFPEGGKLSQYLNNMKINDTIDVRX 506
           +D L+IR        E+ GYV+ + ++  ++ +P       K++++ +++  ++ I VR 
Sbjct: 388 SDPLIIRRVEKDHIAEEDGYVNQMHRIVLESAYPISNVRHLKIAEH-SSLAYSNNISVRW 446

Query: 507 TSGDCSTQETEHSS 548
             G  S Q    SS
Sbjct: 447 FLGATSAQNRNASS 460


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 401 NQIDIAFILIARHRRVCSYD*VVVNFCRQMNMLTDR*SQYMLRRR 267
           +Q D   + + + R+VC ++ ++    RQ+N      S  M++RR
Sbjct: 718 HQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHP-SPMMIKRR 761


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 411 YFKNVHPKFPEGGKLSQYLNNMKINDTIDVRXTSGDCSTQETEHSSLRN 557
           +++N+ P +  G +  Q  N + I  +      S +  T  T HSSL N
Sbjct: 409 FYRNIIPYY-SGKETKQSHNQLSIPSSTPSTPLSDNGPTYSTPHSSLSN 456


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 456 SQYLNNMKINDTIDVRXTSGDCSTQETEHSSLR 554
           ++Y+    +NDT+DVR   G     E E +++R
Sbjct: 88  NEYIKEFAVNDTVDVRFILG-LPENEQELATIR 119


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 458 RQLPSLGKLRMYILKVYLDN 399
           R+L S+GK+  YI KVY D+
Sbjct: 65  RKLFSIGKVLDYICKVYFDS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,038
Number of Sequences: 5004
Number of extensions: 46240
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)