Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060782.seq
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...   102   2e-22
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...   101   4e-22
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...   101   4e-22
05_05_0291 + 23882579-23882660,23883073-23883214,23883310-238834...    64   1e-10
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465...    62   4e-10
01_01_0520 - 3819479-3819535,3819867-3819935,3820127-3820240,382...    44   7e-05
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331...    33   0.21 
07_01_0687 - 5197349-5198665                                           28   6.1  
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181...    27   8.0  
05_03_0488 - 14651532-14652265,14652404-14653988                       27   8.0  

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score =  102 bits (245), Expect = 2e-22
 Identities = 43/87 (49%), Positives = 62/87 (71%)
 Frame = +3

Query: 255 RLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPK 434
           R  LPSP   LGLP+G+H+++ A I   L +RAYTP SS ++ GY++L+IK+YFK   PK
Sbjct: 650 RFALPSPDQKLGLPVGKHVYVCASIGGKLCMRAYTPTSSVDEVGYIELLIKIYFKGEDPK 709

Query: 435 FPEGGKLSQYLNNMKINDTIDVRXTSG 515
           FP+GG +SQYL+ + +  TID++   G
Sbjct: 710 FPDGGLMSQYLDYLPLGATIDIKGPIG 736


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score =  101 bits (242), Expect = 4e-22
 Identities = 45/87 (51%), Positives = 61/87 (70%)
 Frame = +3

Query: 255 RLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPK 434
           R  LPS   VLGLP+G+HI + A I   L +RAYTP S  ++ G+ DL+IKVYFKN HPK
Sbjct: 677 RFALPSSDQVLGLPVGKHIFVCASIEGKLCMRAYTPTSMVDEVGHFDLLIKVYFKNEHPK 736

Query: 435 FPEGGKLSQYLNNMKINDTIDVRXTSG 515
           FP+GG ++QYL+++ +   IDV+   G
Sbjct: 737 FPDGGLMTQYLDSLPVGAYIDVKGPLG 763


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score =  101 bits (242), Expect = 4e-22
 Identities = 45/87 (51%), Positives = 61/87 (70%)
 Frame = +3

Query: 255 RLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPK 434
           R  LPS   VLGLP+G+HI + A I   L +RAYTP S  ++ G+ DL+IKVYFKN HPK
Sbjct: 677 RFALPSSDQVLGLPVGKHIFVCASIEGKLCMRAYTPTSMVDEVGHFDLLIKVYFKNEHPK 736

Query: 435 FPEGGKLSQYLNNMKINDTIDVRXTSG 515
           FP+GG ++QYL+++ +   IDV+   G
Sbjct: 737 FPDGGLMTQYLDSLPVGAYIDVKGPLG 763


>05_05_0291 +
           23882579-23882660,23883073-23883214,23883310-23883400,
           23883555-23883632,23883764-23883844,23883934-23884023,
           23884658-23884723,23884883-23884987,23885127-23885219
          Length = 275

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +3

Query: 249 EIRLGLPSPQHVLGLPIGQHIHLSAK-INDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNV 425
           + R  LP+P  VLGLPIGQHI    +    + VI+ YTP + D D G  +LVIK+Y    
Sbjct: 52  KFRFALPTPASVLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGRFELVIKMY---- 107

Query: 426 HPKFPEGGKLSQYLNNMKINDTIDVRXTSG 515
               P+ G++S + + MK+ D + VR   G
Sbjct: 108 ----PQ-GRMSHHFHEMKVGDYLSVRGPKG 132


>01_06_1120 -
           34645676-34645768,34645880-34645966,34646443-34646508,
           34647126-34647215,34647317-34647397,34647598-34647675,
           34647788-34647878,34647969-34648110,34648479-34648590
          Length = 279

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 RLGLPSPQHVLGLPIGQHIHLSAK-INDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHP 431
           +  LP+P  VLGLPIGQHI    +    + VI+ YTP + D D G+ +LVIK+Y      
Sbjct: 64  KFALPTPTSVLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGHFELVIKMY------ 117

Query: 432 KFPEGGKLSQYLNNMKINDTIDVRXTSG 515
             P+ G++S +   MK+ D + V+   G
Sbjct: 118 --PQ-GRMSHHFREMKVGDYMSVKGPKG 142


>01_01_0520 -
           3819479-3819535,3819867-3819935,3820127-3820240,
           3820330-3820419,3820666-3820743,3820885-3820936,
           3821021-3821091,3821216-3821270,3821889-3821948,
           3822367-3822442,3823108-3823150,3823230-3823349
          Length = 294

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = +3

Query: 342 VIRAYTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVR 503
           +I  YTP+S  + KGY DL+IKVY        P+ GK+SQY  ++K  D ++V+
Sbjct: 97  LITRYTPISDPDSKGYFDLLIKVY--------PD-GKMSQYFASLKPGDVVEVK 141


>07_01_0436 +
           3317334-3317423,3317561-3317908,3317996-3318331,
           3318384-3318442,3318640-3318709,3319259-3319579
          Length = 407

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = -3

Query: 89  NIIGSTILELIV*NILCSSNSLEFLEIS 6
           N+IG  I +  V N+LC+ N LEFLEIS
Sbjct: 171 NLIGVNITDEGVQNLLCNPNVLEFLEIS 198


>07_01_0687 - 5197349-5198665
          Length = 438

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 264 LPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDL 398
           LP P   L + + Q++ LS +++  LV+  YT   S E K YVDL
Sbjct: 295 LPEP---LEMSVYQNLSLS-ELSGALVVAQYTDYRSAEIKSYVDL 335


>05_04_0022 - 17217626-17217643,17217740-17217856,17217987-17218112,
            17218194-17218340,17218423-17218533,17218625-17218747,
            17218827-17218958,17219157-17219252,17219532-17219653,
            17219833-17220130,17220213-17220458,17220711-17220852,
            17221068-17222105,17222183-17222262,17222558-17222800,
            17222907-17222967,17224059-17224675
          Length = 1238

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 419  ECTSEVSRGREAVSVLEQYEDK*YYRCPXDVRRLQYTGNGT 541
            EC  EV + REAV   E Y DK     P +V +  Y+   T
Sbjct: 1035 ECV-EVIQIREAVEQFEIYNDKIIVLTPNNVLKFSYSSRST 1074


>05_03_0488 - 14651532-14652265,14652404-14653988
          Length = 772

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 363 VSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQ 461
           VS+D+DK YV  V+K  F  + P++    KL++
Sbjct: 594 VSTDKDKTYVSTVVKGSFGYLDPEYFRRQKLTK 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,689
Number of Sequences: 37544
Number of extensions: 272291
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)