Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060782.seq
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0)              132   1e-31
SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)         33   0.22 
SB_45367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)       28   6.2  
SB_1508| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  

>SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0)
          Length = 231

 Score =  132 bits (320), Expect = 1e-31
 Identities = 56/84 (66%), Positives = 72/84 (85%)
 Frame = +3

Query: 264 LPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPKFPE 443
           L SP H+LGLP+G H++LSA I+D  VIR YTPV+SD++KG+ +LVIKVYFKNVHPKFPE
Sbjct: 84  LQSPDHILGLPVGNHMYLSATIDDKPVIRPYTPVTSDDEKGFFELVIKVYFKNVHPKFPE 143

Query: 444 GGKLSQYLNNMKINDTIDVRXTSG 515
           GGK+SQYL ++KI DT+D+R  +G
Sbjct: 144 GGKMSQYLESLKIGDTVDIRGPAG 167


>SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)
          Length = 594

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +3

Query: 243 HQEIRLGLPSPQHVL-GLPIGQHIHLSAKINDDLVIRAYTPV--SSDEDKGYVDLVIKVY 413
           H    LG   P  VL  +P+G H+H+   I    + R+YT V  S + D+   +   + +
Sbjct: 141 HNTQLLGFELPPGVLMRVPVGHHVHVKRNIQGMEITRSYTVVLPSLNIDRTEREYEGRRF 200

Query: 414 FKNVHPKFPEGGKLSQYLNNMKINDTIDVRXTSGD 518
           +  +  K    G L+  L  + + D + +   SGD
Sbjct: 201 YLMI--KIYPDGALTPTLQQLAVGDKVLISDYSGD 233


>SB_45367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 243 HQEIRLGLPSPQHVL-GLPIGQHIHLSAKINDDLVIRAYTPV 365
           H    LG   P  VL  +P+G H+H+   I    + R+YT V
Sbjct: 94  HNTQLLGFELPPGVLMRVPVGHHVHVKRNIQGMEITRSYTVV 135


>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
          Length = 381

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 267 PSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNVHPKFPE- 443
           P P+H  G+P  Q   +   I ++LV    T      D G+V+LV      + +PK    
Sbjct: 161 PLPEHKTGVPSEQDRKIGKYIAENLVADGATLQMVMLDVGFVNLVA---ISSQNPKMTAI 217

Query: 444 GGKLSQYLNNMKINDTIDVRXTSGDCSTQETEHSSLRN 557
              +   L    ++D+I  R  S   S+Q  + +++ +
Sbjct: 218 NSCIEVDLTGQVVSDSIGTRMYSVAISSQNPKMTAINS 255


>SB_1508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -3

Query: 536 RFLCTAIS*RRTDIYSIIYLHIVQVLRQLPSLGKLRMYILKVYLDNQIDIAFILIARHRR 357
           R  C  +  RR   YS++ LH+ +    +    +   Y L V L       FIL+A  RR
Sbjct: 159 RSSCFILLARRASSYSLVVLHLTRSSCFILLARRASSYSL-VVLHLTRSSCFILLA--RR 215

Query: 356 VCSYD*VVVNFCRQ--MNMLTDR*SQYML 276
             SY  VV++  R     +L  R S Y L
Sbjct: 216 ASSYSLVVLHLTRSSCFILLARRASSYSL 244



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -3

Query: 536 RFLCTAIS*RRTDIYSIIYLHIVQVLRQLPSLGKLRMYILKVYLDNQIDIAFILIARHRR 357
           R  C  +  RR   YS++ LH+ +    +    +   Y L V L       FIL+A  RR
Sbjct: 228 RSSCFILLARRASSYSLVVLHLTRSSCFILLARRASSYSL-VVLHLTRSSCFILLA--RR 284

Query: 356 VCSYD*VVVNFCRQ--MNMLTDR*SQYMLR 273
             SY  VV++  R     +L  R S Y  R
Sbjct: 285 ASSYSLVVLHLTRSSCFILLARRASSYSQR 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,765
Number of Sequences: 59808
Number of extensions: 334652
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)