Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060782.seq
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical...   129   2e-30
AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical...   124   3e-29
AC006809-2|AAF59625.1|  160|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   9.5  
AF067213-2|AAC16999.1|  225|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical
           protein T05H4.5 protein.
          Length = 309

 Score =  129 bits (311), Expect = 2e-30
 Identities = 54/91 (59%), Positives = 74/91 (81%)
 Frame = +3

Query: 246 QEIRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNV 425
           ++ R GLPS  H+LGLPIGQH++L+A I+  +++R YTPVSSDED G+VDL++KVYFKN 
Sbjct: 66  RKFRFGLPSKDHILGLPIGQHVYLTANIDGKIIVRPYTPVSSDEDLGFVDLMVKVYFKNT 125

Query: 426 HPKFPEGGKLSQYLNNMKINDTIDVRXTSGD 518
           + KFPEGGK+SQ+L ++KI DTI+ R   G+
Sbjct: 126 NEKFPEGGKMSQHLESLKIGDTINFRGPQGN 156



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 178 TLVDSNVKYALPLIEREEISHDTRR 252
           TLVD +VKY LPLIE+ EISHDTR+
Sbjct: 43  TLVDDSVKYPLPLIEKFEISHDTRK 67


>AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical
           protein T05H4.4 protein.
          Length = 303

 Score =  124 bits (300), Expect = 3e-29
 Identities = 52/90 (57%), Positives = 69/90 (76%)
 Frame = +3

Query: 246 QEIRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLVIKVYFKNV 425
           ++ R GLPS  H+LGLPIG H++LSA I   L++R+YTPVS D D GYVDL++KVYFKN 
Sbjct: 60  RKFRFGLPSKDHILGLPIGHHVYLSANIGGKLIVRSYTPVSCDLDLGYVDLMVKVYFKNT 119

Query: 426 HPKFPEGGKLSQYLNNMKINDTIDVRXTSG 515
           H +FP+GGK+SQ+L ++KI DT+  R   G
Sbjct: 120 HERFPDGGKMSQHLESLKIGDTVSFRGPHG 149



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 178 TLVDSNVKYALPLIEREEISHDTRR 252
           TL D +VKY LPLIE+ EISH+TR+
Sbjct: 37  TLEDDSVKYLLPLIEKFEISHNTRK 61


>AC006809-2|AAF59625.1|  160|Caenorhabditis elegans Hypothetical
           protein Y5H2A.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/70 (31%), Positives = 27/70 (38%)
 Frame = -1

Query: 451 FPPSGNFGCTFLKYTLITKST*PLSSSLDTGVYALMTRSSLIFADK*IC*PIGNPNTC*G 272
           F  SG     F K T     T  + ++  T   A  T +     D     P     TC G
Sbjct: 2   FLRSGFVVIMFFKCTRTCIPTQQVDTNTTTTTVATTTTTVSEAPDPCTVCPKTYDTTCQG 61

Query: 271 DGSPSLISWC 242
            G P+LISWC
Sbjct: 62  FGIPNLISWC 71


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +3

Query: 357 TPVSSDEDKGY--VDLVIKVYFKNVH--PK-FPEGGKLSQYLNNMKINDTIDVRXTSGDC 521
           +P+  ++++ +   D  +++  + VH  PK F  GG+    + N K+ND   +   + D 
Sbjct: 20  SPIDDNDNESFYNADGDVELEEEEVHETPKNFKNGGRFKTNMTNPKVNDLTTIEEKNEDL 79

Query: 522 STQETEHSSLR 554
            +  +  S+ R
Sbjct: 80  RSAASSRSASR 90


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 286 NTC*GDGSPSLISWC 242
           NTC G G P+L+ WC
Sbjct: 63  NTCQGFGIPNLLQWC 77


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +3

Query: 357 TPVSSDEDKGY--VDLVIKVYFKNVH--PK-FPEGGKLSQYLNNMKINDTIDVRXTSGDC 521
           +P+  ++++ +   D  +++  + VH  PK F  GG+    + N K+ND   +   + D 
Sbjct: 20  SPIDDNDNESFYNADGDVELEEEEVHETPKNFKNGGRFKTNMTNPKVNDLTTIEEKNEDL 79

Query: 522 STQETEHSSLR 554
            +  +  S+ R
Sbjct: 80  RSAASSRSASR 90


>AF067213-2|AAC16999.1|  225|Caenorhabditis elegans Hypothetical
           protein T25B2.1 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 286 NTC*GDGSPSLISWC 242
           NTC G G P+L+ WC
Sbjct: 124 NTCQGFGIPNLLQWC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,056
Number of Sequences: 27780
Number of extensions: 254549
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)