Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060781.seq
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    42   3e-06
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    21   6.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 41.9 bits (94), Expect = 3e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 356 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SGR
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGR 196


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 5   TRVDPASKRIHSLNKHLQLNP 67
           T VDP S+R+    + L++NP
Sbjct: 509 TGVDPDSERMAFWQRILKINP 529


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 454 LQRTDAYSSSRLADSYVW 507
           L  T  Y SSR +DS +W
Sbjct: 13  LYLTAIYVSSRKSDSGIW 30


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 101 AIIPVTRHD*FSDLVEDVYL 42
           A++PV +H     LV  VYL
Sbjct: 18  ALLPVKKHHRLEKLVPCVYL 37


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 232 RTCVAQIGFCFTPTFQQKLL*STSYSSQKIT 324
           R C +++ FC T   Q   + +T ++  K T
Sbjct: 333 RHCESKVNFCATSPCQNGGVCTTIHAGHKCT 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,609
Number of Sequences: 336
Number of extensions: 2163
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)