Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060781.seq
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 98 6e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 49 4e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 5e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 41 9e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 2e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.033
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.044
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 31 0.13
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 30 0.23
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.31
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.54
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 1.2
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 2.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 5.0
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 6.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 98.3 bits (234), Expect = 6e-22
Identities = 44/83 (53%), Positives = 55/83 (66%)
Frame = +2
Query: 263 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 442
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 443 KTMGYKEPTPIQAQGWPIAMSGR 511
K +G++ PTPIQ Q WP+AMSGR
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 4e-07
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 436
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 437 GVKTMGYKEPTPIQAQGWPIAMSGR 511
+ ++GY++PT IQAQ P SGR
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 5e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 389 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PI F+E + +++G+K YKEPTPIQA WP ++GR
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.1 bits (92), Expect = 9e-05
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 344 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 502
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SGR
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.7 bits (71), Expect = 0.033
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE+ + G+ G++ P+PIQ + PIA+SGR
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGR 82
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.044
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 335 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 484
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+E D + + + +G+K PTPIQ + P+ ++ R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.13
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 509 R 511
R
Sbjct: 127 R 127
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.9 bits (64), Expect = 0.23
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +1
Query: 154 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGFCF 264
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.31
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 0.54
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 371 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
G+ + + F + N +Q+ + +++PT +Q++ P+A+ G+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
F+ + + + G+K PTPIQ + P+ + GR
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 251 LDSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 397
+D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 111 IDVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 452 PLSLHLVAHNQENL--LLQSIE 393
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 273 LSTKTFMIHILQFSKDHHMKSKSTEIIT 356
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 98 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ 18
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 341 YRNNHEVTVSGVEVHNPIQYFE 406
Y N+ + G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 472 RRRFFVTHCLY--TLLHIIRKICFFKVLNRIMNLNATYSYLVIISV 341
RR T CLY + L +I K C + I+ +NA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 160 DLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGFCFTP 270
D+ VD+ + +++V +K S +VR V F TP
Sbjct: 101 DIVDFGVDIYNEDEIVHQKVSAQVRIVVRGATFATTP 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,965
Number of Sequences: 5004
Number of extensions: 34615
Number of successful extensions: 103
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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