Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060781.seq
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 6e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 9e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 3e-06
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 47 8e-06
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 2e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 32 0.32
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 30 0.97
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 30 0.97
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.3
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 29 1.7
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 2.2
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 3.9
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 5.2
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 27 9.1
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 74.5 bits (175), Expect = 5e-14
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +2
Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ ++ + Y +PT IQ Q PIA+SGR
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 317 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 484
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 433
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 434 QGVKTMGYKEPTPIQAQGWPIAMSGR 511
+K Y++PTPIQAQ P+ MSGR
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 469
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 470 PIQAQGWPIAMSGR 511
PIQ Q P+ +SGR
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +2
Query: 341 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 496
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 497 AMSG 508
G
Sbjct: 197 MAHG 200
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 275 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 454
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 455 YKEPTPIQAQGWPIAMSGR 511
++ PTPIQ Q MSGR
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +2
Query: 356 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
EV VSG I FEEAN + V+ YK+PTP+Q PI ++GR
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +2
Query: 356 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
EV VSG I FEEAN + V+ YK+PTP+Q PI ++GR
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 365 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
VSG I F E F + + + GY+ PTP+Q PI M+GR
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 392 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
++ F + G+ G+ PT IQ QG P+A+SGR
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGR 88
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 392 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
I FE+ + + + V GYK+PTP+Q PI R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 0.74
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 377 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 490
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE+ + G+ G+ +P+PIQ + P+A++GR
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGR 85
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE+ + G+ G+ +P+PIQ + P+A++GR
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGR 85
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 287 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 427
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 434 QGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ V +G+ PTPIQA P+A+ G+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGK 48
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 353 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 505
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 28.3 bits (60), Expect = 3.9
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +2
Query: 230 SEHASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 397
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 398 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 487
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 237 CSDLQRILFSHQILQILQIYCHRC-QIETN 151
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 168 CQIETNYRRICCLLQIWN-HRFHGYYSS 88
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
Length = 460
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 321 DLLRTVGCGS*KFLLKGWSETESNLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 145
DL T+G + K LL+ + E +GD D+ R SH+ + + + Y + I N
Sbjct: 41 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 97
Query: 144 RICCLLQIWN 115
R CL+ ++N
Sbjct: 98 RGKCLVTLYN 107
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 321 DLLRTVGCGS*KFLLKGWSETESNLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 145
DL T+G + K LL+ + E +GD D+ R SH+ + + + Y + I N
Sbjct: 52 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 108
Query: 144 RICCLLQIWN 115
R CL+ ++N
Sbjct: 109 RGKCLVTLYN 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,561
Number of Sequences: 59808
Number of extensions: 240683
Number of successful extensions: 750
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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