Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060781.seq
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   9e-10
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 9e-10
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +2

Query: 347 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+GR
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 257 NPIWATHVLTSREFFFP 207
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 257 NPIWATHVLTSREFFFP 207
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 88  TGIIAVETVVPNLEEATNSA 147
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 383 HNPIQYFEEANFPDYVQQGVKTMG 454
           H+P QY        + Q G  TMG
Sbjct: 321 HHPSQYHPHRGSSPHHQHGNHTMG 344


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 236 HASPRLDSVSLQPFNKNF 289
           H   R  + S+ P+NKN+
Sbjct: 433 HFQCRYPNASVTPYNKNY 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,837
Number of Sequences: 438
Number of extensions: 2293
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)