Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060781.seq
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 103 7e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 91 5e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 91 5e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 74 7e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 6e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 65 3e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 4e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 1e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 4e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 1e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 5e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 43 1e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 39 0.002
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.004
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 38 0.004
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 38 0.005
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 36 0.016
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.016
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.037
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 33 0.085
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 33 0.085
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 32 0.20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 0.34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 0.34
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.46
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 30 0.80
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 30 1.1
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 30 1.1
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 30 1.1
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 30 1.1
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 29 1.4
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 2.4
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 2.4
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 28 3.2
At2g33420.1 68415.m04096 expressed protein 28 3.2
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 28 3.2
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 28 4.2
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 4.2
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c... 27 5.6
At2g25460.1 68415.m03049 expressed protein 27 5.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 5.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 5.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 5.6
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 7.4
At3g19515.1 68416.m02473 expressed protein 27 9.8
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 27 9.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 103 bits (247), Expect = 7e-23
Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +2
Query: 242 SPR-LDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
SPR LD L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 419 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PDYV + VK G+ EPTPIQ+QGWP+AM GR
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGR 137
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 90.6 bits (215), Expect = 5e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +2
Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ + + +G+ EPTPIQAQGWP+A+ GR
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 90.6 bits (215), Expect = 5e-19
Identities = 38/89 (42%), Positives = 58/89 (65%)
Frame = +2
Query: 245 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 425 YVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+ + + +G+ EPTPIQAQGWP+A+ GR
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 73.7 bits (173), Expect = 7e-14
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +2
Query: 257 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 436
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 437 GVKTMGYKEPTPIQAQGWPIAMSGR 511
+K Y++PT IQ Q PI +SGR
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 296 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 475
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 476 QAQGWPIAMSGR 511
QAQ WPIAM GR
Sbjct: 185 QAQSWPIAMQGR 196
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 439
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
+K + Y++P PIQAQ PI MSGR
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.5 bits (150), Expect = 4e-11
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +2
Query: 260 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 439
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
+K + Y++P PIQ Q PI MSGR
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 278 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 445
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 446 TMGYKEPTPIQAQGWPIAMSGR 511
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 4e-08
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 287 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 467 TPIQAQGWPIAMSGR 511
TPIQ QG P+ +SGR
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 469
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 470 PIQAQGWPIAMSGR 511
PIQ QG P+ ++GR
Sbjct: 171 PIQVQGLPVILAGR 184
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 344 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SGR
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 362 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
TV GV H F E N + + +T+GYK+PTPIQA P+A++GR
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +2
Query: 341 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + R
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 266 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 442
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 443 KTMGYKEPTPIQAQGWPIAMSGR 511
+ Y +PTP+Q PI + GR
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGR 197
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 502
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 503 SGR 511
GR
Sbjct: 150 DGR 152
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 248 RLDSVSLQPFNKN-FYDPHPTVLKRSPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANF 418
R+DS + P FY P S ++ + R ++ V G V P+ F
Sbjct: 61 RVDSARVFPATDECFYVRDPG---SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGL 117
Query: 419 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
P + ++T GY PTPIQ Q P A++G+
Sbjct: 118 PPKLLLNLETAGYDFPTPIQMQAIPAALTGK 148
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 35.9 bits (79), Expect = 0.016
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 440 VKTMGYKEPTPIQAQGWPIAMSGR 511
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 335 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 424
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 34.7 bits (76), Expect = 0.037
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 272 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 448
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 449 MGYKEPTPIQAQGWPIAMSGR 511
Y +PTP+Q PI +GR
Sbjct: 164 CKYVKPTPVQRNAIPILAAGR 184
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.085
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ R
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.085
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 359 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ R
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 389 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
PI+ F++ D V +GV GYK+P+ IQ + + GR
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGR 60
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE+ + G+ G++ P+PIQ + PIA++GR
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGR 169
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE+ + G+ G++ P+PIQ + PIA++GR
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGR 169
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 509 R 511
+
Sbjct: 84 K 84
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 377 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ G+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGK 47
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +2
Query: 269 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 448
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 449 MGYKEPTPIQAQGWPIAMSG 508
MG+ T IQA+ P M G
Sbjct: 172 MGFARMTQIQAKAIPPLMMG 191
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FE+ + +G+ G+++P+PIQ + PIA++G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG 161
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FE+ + +G+ G+++P+PIQ + PIA++G
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG 161
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FE+ + +G+ G+++P+PIQ + PIA++G
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG 191
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 449 MGYKEPTPIQAQGWPIAMSGR 511
MG++ PT +QAQ P+ +SGR
Sbjct: 48 MGFEAPTLVQAQAIPVILSGR 68
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 239 ASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
ASP L S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 419 PDYVQQGVKTM 451
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 239 ASPRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 418
ASP L S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 419 PDYVQQGVKTM 451
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 184 LEDLEDLVGKKNSLEVRTCVAQIGFCFTPTF 276
+ D++ +GK V C A++G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 23 SKRIHSLNKHLQLNPKI 73
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 511
FE ++ + K +G ++PTP+Q P ++GR
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGR 96
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 401 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 508
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 23 SKRIHSLNKHLQLNPKI 73
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 255
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 202 LVGKKNSLEVRTCVAQIGFCFTP 270
L G+ +L + TC + +G+C P
Sbjct: 164 LAGRNGNLNLHTCTSLVGYCLLP 186
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 159 ETNYRRICCLLQIWNHRFHGYY 94
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 466
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 467 TPIQAQGWPIAMS 505
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 285 FLLKGWSETESNLGDACSDLQRILFSHQILQILQIYCH 172
+L + + E + G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 329 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 427
E E N E G HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 112 VVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLEVRTC 240
V+P+L EATN I+ L V+L + K +L++ C
Sbjct: 643 VIPDLSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNC 685
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,299
Number of Sequences: 28952
Number of extensions: 172274
Number of successful extensions: 574
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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