Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060780.seq
(448 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 96 4e-19
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 70 3e-11
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 64 1e-09
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 60 2e-08
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 59 5e-08
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 58 1e-07
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 52 4e-06
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 43 0.003
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 42 0.005
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 41 0.014
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 38 0.13
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 38 0.13
UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza sa... 34 1.6
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 33 2.1
UniRef50_Q68BG5 Cluster: Type I polyketide synthase; n=1; Strept... 32 4.9
UniRef50_Q22X50 Cluster: Ubiquitin family protein; n=2; Tetrahym... 32 4.9
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 95.9 bits (228), Expect = 4e-19
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Frame = +1
Query: 10 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSS 189
MQ+ ++G + H ++V+ + + Q+K + + ED LS G PL+D LV E+
Sbjct: 1 MQVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPE 60
Query: 190 XTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVV 360
A+ ++ GS V+GQTPKVE TGRAKRR+QYNRRFVNVV
Sbjct: 61 LATLSLAVRVV-GGKVHGSLARAGKVRGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVV 119
Query: 361 QTFGRXXGPNSNS 399
FGR GPNSN+
Sbjct: 120 AQFGRRRGPNSNA 132
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 69.7 bits (163), Expect = 3e-11
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSNS 399
V+GQTPKV TGRAKRR+QYNRRFVNVV TFG+ GPN+NS
Sbjct: 12 VRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 64.5 bits (150), Expect = 1e-09
Identities = 30/48 (62%), Positives = 34/48 (70%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSNS 399
V+GQTP V+ GRAKRRIQYNRRFVNVV TFG+ G N+NS
Sbjct: 12 VRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 60.5 bits (140), Expect = 2e-08
Identities = 41/120 (34%), Positives = 54/120 (45%)
Frame = +1
Query: 40 HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTRPDSAIAW 219
H L V GQE + Q+K + +L + ED + L G PL+D + +
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIPLEDEATLGQCGVEAPHGK----- 57
Query: 220 W*SARIFGSCR*VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSNS 399
V+GQ PKV TGRAKR IQY+ FV VV TFG+ N+NS
Sbjct: 58 ------------VRGQAPKVAKQEKQKKKTGRAKRWIQYHWHFVTVVPTFGK-KDLNTNS 104
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 58.8 bits (136), Expect = 5e-08
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = +1
Query: 19 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTR 198
H + Q H L V GQE + QIK + A++ +D L L G PL+D + +
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHV---ASLEGKDQVLLLAGTPLEDEVTLGQCEVEALS 60
Query: 199 PDSAIAWW*SARIFGS--CR-*VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTF 369
+ ++ GS C V+GQTPKV+ G+AKR YN FV VV
Sbjct: 61 TLEVVGRMLGGKVHGSLDCAGKVRGQTPKVDKESKRRW--GQAKRGTYYNPCFVKVVPHL 118
Query: 370 GRXXGPNSNS 399
+ G N +S
Sbjct: 119 KKKKGTNVSS 128
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 57.6 bits (133), Expect = 1e-07
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Frame = +1
Query: 10 MQLHIRG--QSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELS 183
MQ+ + G +TH LDV+ ++ IK I E+ ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 184 SSXTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVN 354
S ++ GS V+ QTPKV+ GRA RR+QY RR+VN
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115
Query: 355 VVQTFGRXXGPNSNS 399
V G+ GPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 52.4 bits (120), Expect = 4e-06
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSN 396
V+GQTPKV GRA +R+Q+NRRFV V FG+ GPNS+
Sbjct: 14 VRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 43.2 bits (97), Expect = 0.003
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 10 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSE 177
MQL + Q H L+V GQE++ QIK + +L ++ ED + L G L D + +
Sbjct: 1 MQLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAGMTLMDGATLGQ 56
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 42.3 bits (95), Expect = 0.005
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGR 375
VK TPKVE GRA +R++Y RRFVNV T G+
Sbjct: 14 VKSATPKVEKQEKKKEPKGRALKRLKYTRRFVNVTMTGGK 53
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 40.7 bits (91), Expect = 0.014
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFG--RXXGPNS 393
VK QTPKVE GRA +R+ Y RRFVNV G R P+S
Sbjct: 14 VKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 37.5 bits (83), Expect = 0.13
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 7 EMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSE 177
++QL +R H L+V G E+ IK + +L ED + L G+PL ++ +
Sbjct: 16 DVQLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSPLPGEAILGQ 72
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 37.5 bits (83), Expect = 0.13
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 19 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSE 177
++R + H L+V G E++ Q K + +L + ED + L G+PL + + +
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQ 56
>UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza
sativa|Rep: OSJNBb0048E02.10 protein - Oryza sativa
subsp. japonica (Rice)
Length = 423
Score = 33.9 bits (74), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 27 RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 146
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 33.5 bits (73), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVN 354
VK QTPKV GRA +R++Y RRF++
Sbjct: 14 VKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLS 46
>UniRef50_Q68BG5 Cluster: Type I polyketide synthase; n=1;
Streptomyces halstedii|Rep: Type I polyketide synthase -
Streptomyces halstedii
Length = 4194
Score = 32.3 bits (70), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 9 DAVAYQRAIDTRPGRQWPGVHWSDQG 86
DA+A QR P R+WPG W+D G
Sbjct: 3917 DALAEQRRAAGLPPRRWPGAPWADGG 3942
>UniRef50_Q22X50 Cluster: Ubiquitin family protein; n=2; Tetrahymena
thermophila SB210|Rep: Ubiquitin family protein -
Tetrahymena thermophila SB210
Length = 745
Score = 32.3 bits (70), Expect = 4.9
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 7 EMQLHIRGQS--THVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDS 162
EM L I+ S + L +G +I QIK+++ +L+ V E + L CG L+D+
Sbjct: 279 EMILTIKSLSGAQYDLGADGNNTIDQIKQKLSSLSEVECEFMKLIFCGRQLEDN 332
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,405,192
Number of Sequences: 1657284
Number of extensions: 6368479
Number of successful extensions: 17662
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17654
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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