Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060780.seq
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    41   1e-04
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    41   1e-04
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   3.0  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    24   9.3  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   9.3  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFG--RXXGPNS 393
           VK QTPKVE         GRA +R+ Y RRFVNV    G  R   P+S
Sbjct: 14  VKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61



 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 221 GKVHGSLARAG 253
           GKVHGSLARAG
Sbjct: 2   GKVHGSLARAG 12


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFG--RXXGPNS 393
           VK QTPKVE         GRA +R+ Y RRFVNV    G  R   P+S
Sbjct: 14  VKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61



 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 221 GKVHGSLARAG 253
           GKVHGSLARAG
Sbjct: 2   GKVHGSLARAG 12


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 430 YFCILFTYESMNWSW 386
           YFC+++T  S N+SW
Sbjct: 748 YFCVVYTGGSSNFSW 762


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 233 RALYHQAMALSGLVXDDESSETRHESSKGAPHNDRVRSSSPTAARV 96
           R+  H   + SG+     S+   H S    P+        PT+ARV
Sbjct: 527 RSFEHSTSSSSGISPSHSSASLAHLSQASNPNGSSSAPHRPTSARV 572


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 286 VFPLWGFVL*LTCTSQRSV 230
           +FP+ G++L L C + +SV
Sbjct: 360 IFPIVGYILLLACQNNKSV 378


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 188 DDESSETRHESSKGAPHNDRVRSSSPTAARV 96
           DD ++ T HE    A  N    SS PT   V
Sbjct: 451 DDRTAHTVHEKVSSAISNHSALSSQPTCVIV 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,861
Number of Sequences: 5004
Number of extensions: 26495
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)