Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060780.seq
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 54 5e-08
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 34 0.060
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483... 32 0.18
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 29 2.3
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 27 5.2
03_06_0083 - 31532213-31532775,31534016-31534043 27 5.2
04_04_0988 - 29941838-29941889,29942113-29942239,29942345-299423... 27 6.9
08_02_1289 - 25923916-25924586,25925148-25926630 27 9.1
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 27 9.1
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066... 27 9.1
02_02_0400 + 9836045-9837115,9837474-9838577 27 9.1
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSN 396
V+GQTPKV GRA +R+QYNRRFV V FG+ GPNS+
Sbjct: 14 VRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 221 GKVHGSLARAG 253
GKVHGSLARAG
Sbjct: 2 GKVHGSLARAG 12
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 33.9 bits (74), Expect = 0.060
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 27 RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 146
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>02_02_0664 -
12747888-12747900,12748161-12748229,12748332-12748395,
12749540-12749558,12749777-12749843,12749934-12749953,
12750079-12750248,12751646-12751823
Length = 199
Score = 32.3 bits (70), Expect = 0.18
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 6 RDAVAYQRAIDTRPGRQWPGVHWSDQGTHSY 98
R+ + Y+R R WPG+HWSD T Y
Sbjct: 36 REGMMYRRQERGGRTRIWPGLHWSDSSTPLY 66
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 266 CPLTYLHEPKIRALYHQAMALSGLVXDDESSETRHESSKGAPHNDRV 126
C L YLHE R + H+ + S ++ D+E + + H+ RV
Sbjct: 576 CGLAYLHEEWERVIIHRDIKSSNVLLDEEMNGRLGDFGLARLHDHRV 622
>11_08_0035 - 27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 58 GQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSS 186
G S +IK + TLA V + L LS+ G L C VS + S
Sbjct: 909 GLSSESEIKLAVLTLATVIEHLLALSMGGTKLLHDCCVSLMES 951
>03_06_0083 - 31532213-31532775,31534016-31534043
Length = 196
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 70 IGQIKERIRT-LAAVGDEDLTLSLCGA--PLDDSCLVSELSSSXTRPDSAIAWW 222
+G ++ R R ++ G L+++L P L LSSS R D +AWW
Sbjct: 97 VGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLAWW 150
>04_04_0988 -
29941838-29941889,29942113-29942239,29942345-29942392,
29943014-29943088,29943178-29943241,29943316-29943469,
29943721-29943924,29944002-29944190,29944283-29944488,
29944666-29944760,29944846-29944968,29945274-29945322,
29945709-29945780
Length = 485
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 46 LDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTRP 201
+ N + S+G + AA E +L LCG DS ++ S+ T P
Sbjct: 181 ISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGALSALTAP 232
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 43 VLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTRP 201
V DV+ E G+I ++++ E LCGAP+D C +++ + P
Sbjct: 200 VFDVSNNELDGEIPASLKSIDPQMFEG-NKKLCGAPVDAKCEAPSPAATTSPP 251
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 20 ISEGNRHTSWTSMARS 67
+S+GN H WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436
>02_03_0415 +
18805541-18805610,18805962-18806128,18806616-18806645,
18807459-18807515,18808268-18808337,18808915-18810998
Length = 825
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 49 DVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSEL 180
D NG G +E + L++VG+ED+T+ +D+ +S++
Sbjct: 56 DANGGGFSGGAEEGLYRLSSVGEEDMTVKSIMFKIDNLSNLSDI 99
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 332 STTEDLSTLCRPSDVVAD 385
S E L+TLC P DVV D
Sbjct: 445 SAAEHLTTLCTPDDVVLD 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,090,943
Number of Sequences: 37544
Number of extensions: 186896
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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