Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060780.seq
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           73   8e-14
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   5.3  
SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = +1

Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSNS 399
           VK QTPKV+        TGRAKRR+QYNRRFVNVVQTFGR  GPNSN+
Sbjct: 13  VKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 43  VLDVNGQESIGQIKER--IRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTRPDSAI 213
           + +V  +E + +I ER  +      G+ED  ++     L ++C +S   S  T+ DS I
Sbjct: 77  ISEVREEEIVREISERDVVENNVFTGEEDERVAQGKPELQENCQLSSSDSQSTQHDSGI 135


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 155 SKGAPHNDRVRSSSPTAARVRMRS 84
           ++G+PH  R R+SSP  AR R  S
Sbjct: 728 ARGSPHQPRGRASSPGGARGRAAS 751


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 267 NPQSGKTTKKEEEDWP 314
           NP  GKT  +E++DWP
Sbjct: 384 NPPQGKTPIEEDDDWP 399


>SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 323 VEFSTTEDLSTLCRPSDVVADPTPIHRFISK*NAKVTSIL 442
           ++ S+T     +    D +    P HR++   NAKV SIL
Sbjct: 611 IDMSSTATYMVVDAAIDAITSRDPKHRYLVGWNAKVVSIL 650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,438
Number of Sequences: 59808
Number of extensions: 218501
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)