Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060780.seq
         (448 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p pro...    85   4e-17
AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-P...    85   4e-17
AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-P...    85   4e-17
BT010258-1|AAQ23576.1|  434|Drosophila melanogaster RE32966p pro...    30   1.2  
AE014297-3939|AAN14385.1|  404|Drosophila melanogaster CG6154-PB...    30   1.2  
AE014297-3938|AAF56581.1|  404|Drosophila melanogaster CG6154-PA...    30   1.2  

>AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p
           protein.
          Length = 147

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +1

Query: 10  MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSS 186
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G  L +   V+ LSS
Sbjct: 16  MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 75

Query: 187 SXTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNV 357
                +  +      ++ GS      VKGQTPKVE        TGRAKRRIQYNRRFVN 
Sbjct: 76  FELDLNIPML---GGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNF 132

Query: 358 VQTFGRXXGPNSNS 399
           VQ FGR  GPN+NS
Sbjct: 133 VQGFGRRRGPNANS 146


>AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-PB,
           isoform B protein.
          Length = 132

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +1

Query: 10  MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSS 186
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G  L +   V+ LSS
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 187 SXTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNV 357
                +  +      ++ GS      VKGQTPKVE        TGRAKRRIQYNRRFVN 
Sbjct: 61  FELDLNIPML---GGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNF 117

Query: 358 VQTFGRXXGPNSNS 399
           VQ FGR  GPN+NS
Sbjct: 118 VQGFGRRRGPNANS 131


>AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-PA,
           isoform A protein.
          Length = 132

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 55/134 (41%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
 Frame = +1

Query: 10  MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSS 186
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G  L +   V+ LSS
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 187 SXTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNV 357
                +  +      ++ GS      VKGQTPKVE        TGRAKRRIQYNRRFVN 
Sbjct: 61  FELDLNIPML---GGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNF 117

Query: 358 VQTFGRXXGPNSNS 399
           VQ FGR  GPN+NS
Sbjct: 118 VQGFGRRRGPNANS 131


>BT010258-1|AAQ23576.1|  434|Drosophila melanogaster RE32966p
           protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLS-LCGAPLDDSCLVSE 177
           Q H  G+   ++ V G  +IG     +R    +G   LTL+  C  P  D C V E
Sbjct: 170 QTHRTGKIASLIGVEGGHAIGTSLSVLRMFYQLGARYLTLTHTCNTPWADCCKVDE 225


>AE014297-3939|AAN14385.1|  404|Drosophila melanogaster CG6154-PB,
           isoform B protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLS-LCGAPLDDSCLVSE 177
           Q H  G+   ++ V G  +IG     +R    +G   LTL+  C  P  D C V E
Sbjct: 170 QTHRTGKIASLIGVEGGHAIGTSLSVLRMFYQLGARYLTLTHTCNTPWADCCKVDE 225


>AE014297-3938|AAF56581.1|  404|Drosophila melanogaster CG6154-PA,
           isoform A protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 13  QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLS-LCGAPLDDSCLVSE 177
           Q H  G+   ++ V G  +IG     +R    +G   LTL+  C  P  D C V E
Sbjct: 170 QTHRTGKIASLIGVEGGHAIGTSLSVLRMFYQLGARYLTLTHTCNTPWADCCKVDE 225


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,395
Number of Sequences: 53049
Number of extensions: 320896
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)