Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060780.seq
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    58   4e-09
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    28   2.7  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   4.7  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   4.7  
U23486-7|AAC46775.1|  428|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
 Frame = +1

Query: 10  MQLHIRG--QSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELS 183
           MQ+ + G   +TH LDV+   ++  IK  I        E+ ++S     L +   + E  
Sbjct: 1   MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55

Query: 184 SSXTRPDSAIAWW*SARIFGSCR*---VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVN 354
                  S        ++ GS      V+ QTPKV+         GRA RR+QY RR+VN
Sbjct: 56  IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115

Query: 355 VVQTFGRXXGPNSNS 399
           V    G+  GPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 43  VLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELSSSXTRPDS 207
           +L+VNG+ +I    + IR ++A     +T+       DD CLV+E      RP++
Sbjct: 53  ILNVNGETNIKTTADFIRAISAKLPGKVTIEFMR---DDHCLVTEKPMPPRRPNT 104


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 252 PARAKDPCTLPPSNGTVRSS 193
           P RAK P T PPS  TV SS
Sbjct: 24  PCRAKRPTTEPPSTTTVESS 43


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 242 PKIRALYHQAMALSGLVXDDESSETRHESSKGAPHNDRVRSSSPTAARVRMRS 84
           P+ R+ Y +   LS    +DE+S  R +SS+   HND   SS+   +  R RS
Sbjct: 334 PEYRSKYIKQEVLS----EDENSHGRKDSSRKRAHNDS-ESSNEVRSSERKRS 381


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 242 PKIRALYHQAMALSGLVXDDESSETRHESSKGAPHNDRVRSSSPTAARVRMRS 84
           P+ R+ Y +   LS    +DE+S  R +SS+   HND   SS+   +  R RS
Sbjct: 334 PEYRSKYIKQEVLS----EDENSHGRKDSSRKRAHNDS-ESSNEVRSSERKRS 381


>U23486-7|AAC46775.1|  428|Caenorhabditis elegans Hypothetical
           protein F07F6.1 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 213 CLVVKCTDLWLVQVSQRTNPQSGKTTKKEE 302
           C    CTD++ + +S  T  Q GKT   E+
Sbjct: 398 CFQDDCTDVYFLPLSCTTEDQKGKTVDYED 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,428,234
Number of Sequences: 27780
Number of extensions: 159528
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)