Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060780.seq
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 52 1e-07
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO... 52 1e-07
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A) 52 1e-07
At5g56850.2 68418.m07093 expressed protein 27 4.4
At5g56850.1 68418.m07094 expressed protein 27 4.4
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 27 4.4
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 27 4.4
At1g25320.1 68414.m03142 leucine-rich repeat transmembrane prote... 27 4.4
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 27 5.8
>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)
Length = 62
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSN 396
V+GQTPKV GRA +R+Q+NRRFV V FG+ GPNS+
Sbjct: 14 VRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 221 GKVHGSLARAG 253
GKVHGSLARAG
Sbjct: 2 GKVHGSLARAG 12
>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
RIBOSOMAL PROTEIN S30 - Arabidopsis
thaliana,PID:e1358183
Length = 62
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSN 396
V+GQTPKV GRA +R+Q+NRRFV V FG+ GPNS+
Sbjct: 14 VRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 221 GKVHGSLARAG 253
GKVHGSLARAG
Sbjct: 2 GKVHGSLARAG 12
>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
Length = 62
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 256 VKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRXXGPNSN 396
V+GQTPKV GRA +R+Q+NRRFV V FG+ GPNS+
Sbjct: 14 VRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 221 GKVHGSLARAG 253
GKVHGSLARAG
Sbjct: 2 GKVHGSLARAG 12
>At5g56850.2 68418.m07093 expressed protein
Length = 413
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 2 GTRCSCISEGNRHTSWTSMARSPLVRSRNA 91
G+RC I++ N + WT++ RS +S N+
Sbjct: 353 GSRCINIAKINSNNKWTNIERSKKQKSENS 382
>At5g56850.1 68418.m07094 expressed protein
Length = 551
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 2 GTRCSCISEGNRHTSWTSMARSPLVRSRNA 91
G+RC I++ N + WT++ RS +S N+
Sbjct: 491 GSRCINIAKINSNNKWTNIERSKKQKSENS 520
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 MQLHIRG--QSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVSELS 183
MQ+H + + T +DV ++I +K +I+ + + + L G LDD +++ S
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 19 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 117
H+R QS N S +K+R TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417
>At1g25320.1 68414.m03142 leucine-rich repeat transmembrane protein
kinase, putative similar to putative receptor-like
protein kinase GI:4262228 from [Arabidopsis thaliana]
Length = 702
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 136 LCGAPLDDSCLVSELSSSXTRP 201
LCG PL D CL SSS + P
Sbjct: 273 LCGPPLKDPCLPDTDSSSTSHP 294
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RHEMQLHIRGQS--THVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPLDDSCLVS 174
R MQ+ I+ + T +L+V ++I +KE+I+ + + L G L+D +
Sbjct: 549 RGGMQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLG 608
Query: 175 E 177
+
Sbjct: 609 D 609
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,300
Number of Sequences: 28952
Number of extensions: 148422
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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