Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060779.seq
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    28   1.0  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    26   4.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.1  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    25   9.3  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 622 YSKNSTYKITLLYK*XFPYLIFVKLN 545
           Y +NS YKIT+LY+  F  L FV+ N
Sbjct: 271 YVQNSFYKITILYEIKFDDLGFVQPN 296


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 430 TCVVRKTFVNIIKTLTISLPLRN*LIITNLNDEQYNCEVTT 308
           T   + +F+NI+  L  +L L++  IIT LN ++    V+T
Sbjct: 428 TLAPQHSFLNIVINLNPALALKSYTIITLLNGKRLGAGVST 468


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 239 SRSLSRIARRRQPRCVWRPLHY 304
           S++ S++ RRR+ R   RPLHY
Sbjct: 461 SKTKSKLQRRRRRRHEARPLHY 482


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 324  LYCSSFKLVIIN*FLNGNDIVKVLI 398
            LYC+SF L+ I+ F+N N  +++ I
Sbjct: 1997 LYCASFLLIGISSFINENMYLRLWI 2021


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 271 ATSSYARERTRRLSLSVSVAQPPPQAVTSL 182
           AT+S     T  L   V VAQPP  +++ L
Sbjct: 7   ATTSTVSNATGDLKKDVEVAQPPEDSISDL 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,292
Number of Sequences: 5004
Number of extensions: 43174
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)