Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060779.seq
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0947 + 32999767-33000300,33000363-33001519,33001618-33002113     33   0.19 
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    29   4.2  
04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822           28   5.5  
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    28   5.5  

>02_05_0947 + 32999767-33000300,33000363-33001519,33001618-33002113
          Length = 728

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -2

Query: 340 NDEQYNCEVTT-IVM*GPPHTARLATSSYARER----TRRLSLSVSVAQPPPQAVTS 185
           +D+Q + +V+T IV   P H  RLAT   AR+      R L L   VA+PPP+ + S
Sbjct: 29  HDDQQDDDVSTYIVHVMPAHAPRLATHRIARDHYAPFLRELLLPPHVARPPPRLLYS 85


>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 16  LSTENCNGHSMSNGKRDEEDEKAKIIPWRAQLRKTNS 126
           LST   +G S++ G+ ++ D++ KI+    QLRK +S
Sbjct: 212 LSTFKQSGDSLTGGETNKTDKQFKILKHVIQLRKASS 248


>04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822
          Length = 270

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 28  NCNGHSMSNGKRDEEDEKAKIIPWRAQLRKTNSK 129
           +CN H +S   RD+  E+  I+ W  QL   + K
Sbjct: 115 SCNEHKLSEELRDKCKERGLIVSWCPQLEVLSHK 148


>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
            27175673-27175753,27175838-27175894,27176103-27176202,
            27176280-27176350,27176427-27176567,27176657-27176863,
            27177442-27177612,27177735-27177815,27177887-27177940,
            27178040-27178154,27178302-27178441,27178976-27179197,
            27179278-27179376,27179461-27179580,27179776-27179981,
            27180072-27180249,27180426-27180486,27180587-27180696,
            27180765-27180896,27181124-27181165,27181592-27181762,
            27181806-27181808,27181848-27181974,27182130-27182164,
            27182982-27183083,27183167-27183224,27183314-27183415,
            27183513-27183659,27183744-27183880,27183973-27184122,
            27184234-27184393,27184930-27185075,27185162-27185305,
            27185535-27185663,27186376-27186420,27187103-27187192,
            27187473-27187475
          Length = 1506

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 381  IVKVLIMFTNVLRTTHVKNGL--*VFSIDFIYLILTMF*IFLLNFVCIFLNSDTYFKFSF 554
            IVK+L  + NVL+  +V + L   VF+  F ++ + +F   LL   C   ++  Y K   
Sbjct: 1261 IVKILTNYLNVLKANYVPSFLISKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGL 1320

Query: 555  TKIK 566
             +++
Sbjct: 1321 AELE 1324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,058
Number of Sequences: 37544
Number of extensions: 250993
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)