Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060779.seq
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.5  

>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 334 EQYNCEVTTIVM*GPPHTARLATSSYARERTRRLSLSVSVAQPPPQAVTSLLRLK*VSLQ 155
           ++Y  E+    + G P T  +   + A +R R LSLS++ + PP +   S          
Sbjct: 450 DKYGLELPRTKVKGLPRTCGIYAGTTACQRERYLSLSLNGSPPPGRFEASCAE----DGS 505

Query: 154 AKSILVGSVCCWFCV 110
              +  GS  CW CV
Sbjct: 506 YNRVQCGSGLCW-CV 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,991
Number of Sequences: 59808
Number of extensions: 307855
Number of successful extensions: 729
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)