Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060779.seq
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.27 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   5.8  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   5.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 157 QAKSILVGSVCCWFC 113
           QAK  + G  CCW C
Sbjct: 595 QAKKYVAGEQCCWHC 609


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 631 LHDYSKNSTYKITLL 587
           + +YSKN+T+ IT+L
Sbjct: 1   MKNYSKNATHLITVL 15


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 631 LHDYSKNSTYKITLL 587
           + +YSKN+T+ IT+L
Sbjct: 1   MKNYSKNATHLITVL 15


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 398 YVYECLAHNACKKWIVGIFD*FYLFNT 478
           YVYE   ++   +W+  +    Y F+T
Sbjct: 283 YVYEDSTYDDINQWVYPLTGCLYYFST 309


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = -2

Query: 136 GSVCCWFC 113
           G  CCW C
Sbjct: 463 GDTCCWVC 470


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = -2

Query: 136 GSVCCWFC 113
           G  CCW C
Sbjct: 553 GDTCCWVC 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,769
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)