Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060779.seq
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32740.1 68414.m04037 expressed protein                             28   4.6  
At1g51390.1 68414.m05782 nitrogen fixation NifU-like family prot...    28   6.1  

>At1g32740.1 68414.m04037 expressed protein
          Length = 312

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 42  LDVERQTRRGRRKG*DNTVARTATQNQQQTEPTRIDFACKLTYFSLSRDVTACGGGCATE 221
           +++ER TRR       ++  R   Q  Q+      D A  L    L + V  C GGC + 
Sbjct: 171 VEIERATRRHNELVARDSQLRAEVQVWQERAKAHEDAAASLQS-QLQQAVNQCAGGCVSA 229

Query: 222 TD 227
            D
Sbjct: 230 QD 231


>At1g51390.1 68414.m05782 nitrogen fixation NifU-like family protein
           simikar to HIRA-interacting protein 5 (NIFU FAMILY)
           (SP:Q9QZ23)  {Mus musculus}; contains Pfam profile:
           PF01106 NifU-like domain
          Length = 275

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 305 SNVRAATHSAAGDVELCARENETAVSIRLSRATSAAGCDISA 180
           + +R +     GD+E C  + ET + ++L    + +GC  S+
Sbjct: 197 TRIRPSVQDDGGDIEYCGFDTETGI-VKLRMQGACSGCPSSS 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,766
Number of Sequences: 28952
Number of extensions: 209231
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)