Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060777.seq
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.1
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 27 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.7
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 5.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.0
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 26 5.0
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 25 6.5
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.5
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 25 8.7
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 8.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 8.7
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 300 WWFLSVVLHKLYQM*SEVAYH*GLSFV*IRKCHSIQKS 413
WWFLS V+ Y + S + G+SF+ + H QK+
Sbjct: 1984 WWFLSRVVQARYIL-SLPFFFFGISFILVAITHFFQKT 2020
>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 517 TIGCQPNEQSLSLLPGHSAKIVSAKFQLTLK-WTLGD 410
++ + + + +LPGHSA + S FQ+ + TLG+
Sbjct: 12 SVAMESATEKIIILPGHSADLTSVTFQIQKEDHTLGN 48
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 415 QESILESAGTWLKRSLQSV 471
+ SILE+ TWL R LQ V
Sbjct: 198 KNSILENNNTWLSRELQGV 216
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 212 YSIVYLRSILKDPTILYYVS*NLDQSKSPKKPQVP-RLYWSVMSNTVLLKLRISKTSRLS 36
YSI + +LK P I + S + +K PKK ++P ++ + L+ R+ +
Sbjct: 91 YSIDKAQGLLKKPAIETHASTSDVANKKPKKEKLPYKVIHAAHLTKPQLRFRVQPNNSRE 150
Query: 35 LDNTWK 18
+WK
Sbjct: 151 FVWSWK 156
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 16 RFQVLSSERRLVLDIRNFSKTVLLITDQYNLG 111
R LS + +IRNF K + L+ D NLG
Sbjct: 456 RINTLSCDEDEWDEIRNFMKCIALMFDSMNLG 487
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 166 CIMYHKIWISPKVQRSHRY 110
CIM H W+SP++Q Y
Sbjct: 557 CIMIHGWWLSPELQMRRPY 575
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 160 MYHKIWISPKVQRSHRYPDCIGRL 89
+Y K +SPK SHRYP G+L
Sbjct: 300 LYKKRNVSPKEAFSHRYPVRQGKL 323
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 302 PTRLTVDHPRKICEP*KPLTTPSH 231
PT + ++ P K+C + L TP H
Sbjct: 29 PTSVNIEDPSKLCISSEKLNTPMH 52
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 462 AECPGSRDKLCSFGWHPIVISVAQRKMALDLEGTESLRLKNYEQ 593
A+ P R K+ GW + + Q ESL + +EQ
Sbjct: 2 ADIPADRKKIVQEGWSRLFSDIEQPSYIQKFPSQESLYVSFFEQ 45
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -3
Query: 249 TDHSITRYVHRALFHCLFTLNFKGSDHFVLCIIKF 145
TDH + ++ LF C++ + F+ D ++ + K+
Sbjct: 336 TDHGPSYGLYLYLFFCIYKIKFQKCDMNIVMLTKY 370
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 386 YLNERESSMVSDFALHLIELMKNHTEKPPTRL 291
Y NE E + +DF + +++ N T+KP T++
Sbjct: 43 YNNEEEEA--ADFVMEHVDVYPNFTKKPITKV 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,468
Number of Sequences: 5004
Number of extensions: 50149
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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