Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060777.seq
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0928 + 33085403-33089224                                         32   0.31 
10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630           28   5.0  
12_01_0541 + 4251931-4254141                                           28   6.7  
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894...    28   6.7  

>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 403 FKNHQESILESAGTWLKRSLQSVQAV--EINSAHLAGIRSSYQLLREKWL*TWR-ELNH* 573
           FK+H  S  E++  WL+  L+  + +   +  + LA      QL R+K + TWR  L + 
Sbjct: 329 FKSHAFSGAETSDPWLREKLEIAKKISRRLGQSPLAAKAVGSQLSRKKDIATWRAALKNG 388

Query: 574 DLKITNKA 597
           +L  T KA
Sbjct: 389 NLSETRKA 396


>10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630
          Length = 242

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 323 KNHTEKPPTRLTVDHPRKICEP*KPLTTPSHV 228
           +N  + P  R+T  HP   C P  P  TP+HV
Sbjct: 71  ENDADPPLYRVTYIHPHT-CNPSPPAPTPAHV 101


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 445 WLKRSLQSVQAVEINSAHLAGIRSSYQLLREKWL 546
           W+K  L + +AV   S  +A  R  ++LLR +WL
Sbjct: 475 WVKDQLATTRAVTRRSLPVAVKRQIHRLLRSEWL 508


>03_06_0184 -
           32188778-32188947,32189104-32189173,32189332-32189473,
           32189559-32189739,32189857-32190051,32190782-32190795,
           32190815-32190864,32191493-32191519
          Length = 282

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 410 FLNAMTFPYLNERESSMVSDFALHLIELMKNHTEK 306
           F++A T P L E+    V DF  +++ L+++  +K
Sbjct: 228 FVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQK 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,362
Number of Sequences: 37544
Number of extensions: 299788
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)