Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060777.seq
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    31   0.85 
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    31   0.85 
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    31   0.85 
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   7.9  

>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 175  GSFKIERK*TME*SPMYVTCDGVVSGFHGSQIFLGWSTVRRVGGF 309
            G F +    T +   + V CDGV   F  +QIF+G S +++   F
Sbjct: 1313 GEFPVHDTETNQGGLLQVRCDGVAVIFAHNQIFIGLSNIKKCNTF 1357


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 175  GSFKIERK*TME*SPMYVTCDGVVSGFHGSQIFLGWSTVRRVGGF 309
            G F +    T +   + V CDGV   F  +QIF+G S +++   F
Sbjct: 1313 GEFPVHDTETNQGGLLQVRCDGVAVIFAHNQIFIGLSNIKKCNTF 1357


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 175  GSFKIERK*TME*SPMYVTCDGVVSGFHGSQIFLGWSTVRRVGGF 309
            G F +    T +   + V CDGV   F  +QIF+G S +++   F
Sbjct: 1313 GEFPVHDTETNQGGLLQVRCDGVAVIFAHNQIFIGLSNIKKCNTF 1357


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 74  KRYCS*PTNTIWVPVASLDFWTDPNFMIHNTKWSDPLKLSVNRQW 208
           +RY S     + +P  ++DF +   F +H T+    L LSV+RQW
Sbjct: 423 RRYWS-TAYEVCMPTVTVDF-SPVRFEVHFTEGVRVLDLSVDRQW 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,952
Number of Sequences: 27780
Number of extensions: 267357
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)