Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060777.seq
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16370.1 68417.m02479 oligopeptide transporter OPT family pro...    29   3.2  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    27   7.4  
At3g26270.1 68416.m03278 cytochrome P450 71B25, putative (CYP71B...    27   7.4  

>At4g16370.1 68417.m02479 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 637

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 244 VSGFHGSQIFLGWSTVRRVG-GFSVWFFISSIRCRAKSLTIE 366
           +S +HGS +   WS++  VG GF ++ +I    C  K  T +
Sbjct: 198 ISAYHGSPLVAPWSSILNVGVGFIMFIYIIVPVCYWKFNTFD 239


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 423 HFRVSWNLAETIFAECPGSRDKLCSFGWHPIVISVAQRKMALDLEGTE 566
           HF+  W  AE +        +K     W P+V+  A R+M    +GTE
Sbjct: 381 HFQFHWMKAEPVIVR--NVLEKTSGLSWEPMVMWRACREMDPKRKGTE 426


>At3g26270.1 68416.m03278 cytochrome P450 71B25, putative (CYP71B25)
           identical to Cytochrome P450 71B25 (SP:Q9LTL2)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067
           cytochrome P450
          Length = 501

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 410 FLNAMTFPYLNERESSMVSDFALHLIELMKNHTEKPPTRLTVDHPRKICE 261
           FLN M   +  + +    SD    L++++ N  +    +LT+DH + I +
Sbjct: 251 FLNHMIDDHQKQNQPQDRSDIVGSLLDMIHNQEQDKSFKLTIDHLKGITQ 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,675
Number of Sequences: 28952
Number of extensions: 257255
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)