Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060776.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.13 
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -3

Query: 487 CGNGC-GYDCASNYDGGNETWTCACDRNDSCMAMRGDHIAPSEREVPCRPTFVRPSCPG 314
           C +G  GY C  N D   +    AC  N +C+   G        E  C P FV P C G
Sbjct: 248 CPSGTLGYICEINVD---DCRPGACHNNGTCLDKVGGF------ECKCPPGFVGPRCEG 297


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 365 RWRDMVAPHRHTGVV 409
           RWRD +    H+GVV
Sbjct: 310 RWRDRIYDAIHSGVV 324


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 514 NFLSQSESDCGNG 476
           +F  Q+ S CGNG
Sbjct: 38  SFRKQNSSSCGNG 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,083
Number of Sequences: 336
Number of extensions: 2263
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)