Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060776.seq
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 54 6e-08
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 54 6e-08
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 45 4e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 45 5e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 4e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 40 0.001
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 40 0.001
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.002
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 39 0.002
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 39 0.003
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 38 0.004
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 38 0.004
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.004
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.004
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.005
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 38 0.005
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.005
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.007
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.007
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 38 0.007
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 37 0.010
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 37 0.010
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 37 0.010
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 37 0.010
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 37 0.010
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.010
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.010
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.013
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 37 0.013
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 36 0.017
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 36 0.017
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.017
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.022
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.022
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.022
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.022
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.029
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.029
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 35 0.039
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.039
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 35 0.051
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.051
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.051
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.051
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.051
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.068
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.068
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.068
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.068
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 34 0.089
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 34 0.089
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.089
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.089
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.089
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.089
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.12
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.16
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.16
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.16
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.16
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.16
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 33 0.21
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.21
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.21
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.21
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 32 0.27
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.27
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 0.27
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.27
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 32 0.36
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.36
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.48
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.48
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.48
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.48
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 31 0.48
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.48
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.48
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.48
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 31 0.48
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.63
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.63
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 0.63
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 0.63
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.63
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.63
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.63
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.83
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.83
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 1.1
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 1.1
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.1
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 1.1
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.1
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.1
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 30 1.1
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.5
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.5
At5g03480.1 68418.m00304 expressed protein ; expression support... 30 1.5
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 1.5
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.5
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.5
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 1.9
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 1.9
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 1.9
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 1.9
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.5
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.5
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 2.5
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 2.5
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.4
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 3.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 3.4
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 4.4
At3g56430.1 68416.m06276 expressed protein unknown protein At2g4... 28 4.4
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 28 4.4
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 28 4.4
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 4.4
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 4.4
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 28 4.4
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.9
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 5.9
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 5.9
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 28 5.9
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)... 28 5.9
At5g40510.1 68418.m04914 expressed protein 27 7.8
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 7.8
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 27 7.8
At2g40800.1 68415.m05033 expressed protein 27 7.8
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.8
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.8
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKG 259
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKG 259
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR G
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
SL V N+ PE+LR FER G V D+YIPRD Y G+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 86 QPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKG 259
SL V NL + EDLRR FE+ G V DIY+PRD Y G
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ RGF F++F + DA EA MDG +L GREL V A
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKG 259
SL V NL + EDLR+ FE+ G V DIY+PRD Y G
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
R+SRG AFV + R DA +A +MD ++L+GR+L V +A
Sbjct: 95 RQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDAE+A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/37 (56%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F E DA A D MDG+ L GR LR+ A
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+ S+G+AF++F + DA A++TMD RM +GR + + +A+ G
Sbjct: 78 KRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPG 119
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V NLT+RTT +DLRR FE+ G+V D + + Y G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 51 QKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 137 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
G L + NL P DLR FER G + DIY+PR+ Y G+
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
E RGF FV++ DA EA+ M+ +++ GRE+ + A
Sbjct: 86 EPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV F ++DA+ A++ M+G+ L R++R A G
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +1
Query: 196 PRFRKVRRSW*YLHSQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
P +++ S + S + ++++ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 247 SVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S + +GF F+ F DA +AL ++DG+++DGR + V++A+
Sbjct: 42 SETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF F+ F E++ +EA+ M+G LDGR + V A+
Sbjct: 47 SRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRG+ FV + + + E AL+++DG L+GR +RV +A+
Sbjct: 217 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+SRGFAFV D +D +DG GR L+V A
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV F ++DA+ A+D + G+ L R++R A G
Sbjct: 179 SRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +1
Query: 232 LHSQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ S + +++E + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 80 VESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 231
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +1
Query: 232 LHSQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ S + ++++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 227
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +1
Query: 232 LHSQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+ S + ++++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV + +AE A+ MDG+ L+GR + V++ G
Sbjct: 43 SRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKLFGIG 82
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 271 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+ FV F RDAE+A+ DG LDG LRV++A G
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGG 83
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
G+AFV F + RDA++A+ DG DG LRV++A G
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGG 83
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
R+S G+ +V F + DA+ A++ M+G+ DGR + V+ + G
Sbjct: 115 RQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPG 156
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
SRGF FV + E A +G LDGR LRV
Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 253 QRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+RE R FV FF+ RDA +AL M+G+++ G+ + +Q +R G
Sbjct: 218 KREQR---FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPG 257
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV F + + +A++ M+G+ LDGR + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV + + EA+ +DG+ L+GR +RV +A
Sbjct: 284 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+SRGF FV +AE A++ + L+GR L V A
Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV F + + ++A++ M+G+ LDGR + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV F + + ++A++ M+G+ LDGR + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+ F FV + + A+ A+D M+GR L G++L+VQ+ R
Sbjct: 389 SKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
V SRGF FV +A+EA+ + + GR ++V
Sbjct: 152 VTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 253 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R +AFV F + RDA++A +DGR DG + V+ +R
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
V +GFAF+R+ +A +A+ M G+ LDGR + V+ A+
Sbjct: 113 VANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 89 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEV 223
S L S PP G L V L++RTT + LR FE+ G +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F A A+ +DGR L GR ++V A
Sbjct: 80 SRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 35.9 bits (79), Expect = 0.022
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 125 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKG 259
P+ + +L V L+ RTT E LR F + GEV D + DR G
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+GF FVR+ D+ + + MDG+ LDG + + AR
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
V SRGF FV + E A +G +GR LRV
Sbjct: 135 VTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
V SRGF FV + E A +G +GR LRV
Sbjct: 135 VTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARY 378
E RGFAFV+F + D A++ +G + GR + V+ A +
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 149 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 247
L + NL ++ P D++ VF G V D++IP++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKN 365
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.029
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGFAFV F +A A+ +DG+ L GR +RV A
Sbjct: 74 SRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 238 SQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S R R SRGF FV+ + A+ +DG+ L+GR ++V +A
Sbjct: 240 SDRETGR-SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+SRGF FV +AE+A++ + ++GR L V A
Sbjct: 152 QSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 214 SRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 34.7 bits (76), Expect = 0.051
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 277 FVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
FV F++ RDA A D M+G+ + G+++ ++ +R G
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPG 287
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
RESRGF F+ DA + ++D +L GR + V+ AR
Sbjct: 113 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKAR 152
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.051
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+ F F+ + + A+ A++TM+G L G++L+VQ+ R
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.051
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+ F F+ + + A+ A++TM+G L G++L+VQ+ R
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.068
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+GF F+ F DA++AL ++G++++GR + V+ A+
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.3 bits (75), Expect = 0.068
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+G+AF+ + RD + A DG+ +DGR + V + R
Sbjct: 179 KGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.3 bits (75), Expect = 0.068
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.9 bits (74), Expect = 0.089
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
V SRG+ FV F A A+ M+G+ L+G + V +A+
Sbjct: 67 VTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.089
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
V S+GF FV F +A++AL +G+ L+GR + V A+
Sbjct: 70 VSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAK 111
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 110 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 247
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 188 DLRRVFERCGEVGDIYIPRDRYKGK 262
D R FER GE+ D+Y+P+D Y K
Sbjct: 106 DFRSHFERYGEITDLYMPKD-YNSK 129
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 216 KSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 369
SR F F DA ++ ++G ++GRE++V +
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.089
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 134 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ G+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.9 bits (74), Expect = 0.089
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 244 RSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R + +S+GF FV F DA A+D ++G+ D +E V A+
Sbjct: 257 RDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRG FV F +A A+ M+G+M+ + L V +A+
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 253
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 139
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 101 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERC 214
K S G P +DG + + NL + TT D+R++F C
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC 285
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMAR 375
SRGFAFV F+ DA +AL+ + L+ G+ LRV A+
Sbjct: 498 SRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 125 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 247
P G L V NL + +DLR+VFE G V + +PRD
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 238 SQRSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 369
S + + +G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 445 SVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 244 RSVQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R ++RGFAFV +A+ A+D D + GR + V AR
Sbjct: 128 RQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFAR 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 107 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGKVE 268
+Y PP ++ V NL T E+L++ F + GEV + IP + G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R +AFV F DA A++++ G L G LR++ A+
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAK 94
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 253 QRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
Q SRGF FV + +A AL M+G+M+ + L + +A+
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
V S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 171 VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+S+GF FV F +A +A+ T G+M G+ L V +A+
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
R RG+AFV F DA A +T++G + L V A+
Sbjct: 238 RLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGR 351
+GFA+V F + +AE+AL ++ +++DGR
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 253
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVLQKR 167
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 253
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 253
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+ +GFA+V F E +EAL + L GR+L+V R
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKVSPKR 164
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+S+GF FV F DA A+++++G D +E V A+
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 105
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+G FV F +A EA+ + G+M++ + L V +A+
Sbjct: 171 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 208
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+GF FV + DAE+A M+ + LDG + V AR
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR 111
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+G FV F +A L+ M+G+M+ G+ L V +A+
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 360
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELR 360
RG +V F R DAE+A MDG +DG+ ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
RESRGF F+ DA + ++D +L GR + V+
Sbjct: 83 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGR 351
R SRGFAFV +DAE + ++ +L+GR
Sbjct: 110 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRMLDGR 351
R SRGFAFV +DAE + ++ +L+GR
Sbjct: 109 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
+S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V + + T DL VF + GE+ D+ + RD+ GK
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 107 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 107 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
SY R P + V L + T +++RR FE+ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 155 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
V L + T EDL+R F + G+V D I DR G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 149 LKVDNLTYRTTPEDLRRVFERCGEVGDI 232
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 149 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYK 256
L V +L + T +++ +F + G V D+Y+ RD Y+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 149 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYK 256
L V +L + T +++ +F + G V D+Y+ RD Y+
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR 248
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+ + S+G+AF+ + A AL M+G++++G + V +A+
Sbjct: 318 ISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAK 359
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +1
Query: 265 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 185 EDLRRVFERCGEVGDIYIPRDRYKG 259
++LR F +CGEV +++P DR G
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
SRGF FV + +A A+ M+G+M+ + L V +A+
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
+SR F FV F + A A++ M+G ++D +EL V A+
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S+G FV F +A +A+ M+G+M+ + + V +A+
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
SRGF FV + A A+ M + LDGR + V A G
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSG 115
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 375
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVEWTK 73
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 375
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVEWTK 73
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 191 LRRVFERCGEVGDIYIPRDRYKGKVEDSPS 280
L + F CGE+ IY+PRD +K K+ S S
Sbjct: 44 LTKHFASCGEITQIYVPRD-FKKKILKSVS 72
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 191 LRRVFERCGEVGDIYIPRDRYKG 259
L + F+ CGE+ +Y+P D +G
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERG 155
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMAR 375
GFAFV + RDAE+A+ +D GR GR LRV+ +
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVEWTK 73
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 153 SRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 366
ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 147 ESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGR 336
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDGK 61
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 345
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 375
G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 345
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 375
G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 107 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
SY R P + V L + T +++RR F++ GE+ + I D+ GK
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 188 DLRRVFERCGEVGDIYIPRDR 250
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 375
S F F + RDA++A +DGR DG + V+ +R
Sbjct: 13 SSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSR 50
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMDGR 336
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDSRDARDAIREVDGK 61
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 256 RESRGFAFVRFFERRDAEEALDTMDGRM 339
R+S G+ +V F + DA+ A++ M+G++
Sbjct: 96 RQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 107 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGKVE 268
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR G V+
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 363
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 268 GFAFVRFFERRDAEEALDTMDGRML--DGRELRVQMAR 375
G+AFV F + RDAE+A+ +D + R L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73
>At3g56430.1 68416.m06276 expressed protein unknown protein
At2g40800 - Arabidopsis thaliana, EMBL:AC007660
Length = 434
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 378 ISRHLNAKFPAVQHSSVHRVQGFFSITTLEKPYEGESSTFPLYR-SLGM 235
++ + + F S +V G F+ ++KP + SSTF YR +LG+
Sbjct: 125 VNMNFVSAFRLFSSSGFRKVDGNFARKVVDKPIKAVSSTFARYRMALGL 173
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = -3
Query: 487 CGNGCGYDCASNYDGGNETWTCACDRNDSCMAMRGDHIAPSEREVPCRPTFVRPS 323
CG GCG+ A + G TW D S +A P +P V+ S
Sbjct: 57 CGGGCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFPLPTEAPVVQAS 111
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 98 FKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGK 262
F+M G + + V L + T + +RR FE+ GE+ + + D+ G+
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYG 381
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 141 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTKG 260
W K I + TE++ LK +A F + EK++ + E+G++G
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 262 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 360
S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 372
+S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 155 DSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 146 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 241
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 259 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 360
+ +G+AFV F + A EA+DT++ G+ ++
Sbjct: 131 DGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 113 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYKGKVEDS 274
G PP + G+VSLK +L+ ++ + F G + I + R+ G++ ++
Sbjct: 279 GHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEA 332
>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
(MT-Q) (MT-2) identical to Metallothionein-like protein
1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
thaliana)
Length = 45
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -3
Query: 499 SESDCGNG----CGYDCASNYDGGNETWTCACDRNDSC 398
++S+CG G CG C+ + E C+C N SC
Sbjct: 2 ADSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39
>At5g40510.1 68418.m04914 expressed protein
Length = 333
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 200 VFERCGEVGDIYIPRD--RYKGKVEDSPS*GF-SSVVMLKKPWTRWTDECWTAGNFAF 364
V E G GD+ I D RYKG V+D+ GF V++ KPW+ E +G F F
Sbjct: 83 VCEGGGSDGDVLIFPDMIRYKG-VKDTDVEGFFEDVLVNGKPWSSGIQE-EISGTFVF 138
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 191 LRRVFERCGEVGDIYIPRDRYKG 259
L + F CG++ IY+PRD +G
Sbjct: 227 LEKHFASCGKITHIYVPRDFERG 249
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 487 CGNGCGYDCASNYDGGNETWTCA 419
CG+ Y C + Y G +T TCA
Sbjct: 398 CGHEFCYSCGAEYREGQQTCTCA 420
>At2g40800.1 68415.m05033 expressed protein
Length = 377
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 348 AVQHSSVHRVQGFFSITTLEKPYEGESSTFPLYR 247
+ + S +V G F+ ++KP + SSTF YR
Sbjct: 101 STKSSGFRKVDGSFARKVVDKPVKAVSSTFARYR 134
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMD 330
V R G+AF+ F + RDA +A+ +D
Sbjct: 33 VARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 250 VQRESRGFAFVRFFERRDAEEALDTMD 330
V R G+AF+ F + RDA +A+ +D
Sbjct: 33 VARRPPGYAFLEFDDERDALDAISALD 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,989
Number of Sequences: 28952
Number of extensions: 217823
Number of successful extensions: 840
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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