Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060774.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   0.91 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   0.91 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.4  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +1

Query: 409 TVASTSDSGERPWRQRCCYRRPNASFRLEDTL-LKDSELPL---VVADKFQRSTRPNRLS 576
           T    + SGERP+R R C +  + S  L   L +   E P    +   +F +S   NR  
Sbjct: 66  TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYECKLCLLRFSQSGNLNRHM 125

Query: 577 SSEGAQGMV 603
              GA  M+
Sbjct: 126 RVHGAASMM 134


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +1

Query: 409 TVASTSDSGERPWRQRCCYRRPNASFRLEDTL-LKDSELPL---VVADKFQRSTRPNRLS 576
           T    + SGERP+R R C +  + S  L   L +   E P    +   +F +S   NR  
Sbjct: 322 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYECKLCLLRFSQSGNLNRHM 381

Query: 577 SSEGAQGMV 603
              GA  M+
Sbjct: 382 RVHGAASMM 390


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 410 PSRQPPTAESGLGGSVAATGVPTLRSG 490
           P    P+  SGLGG ++   +P L  G
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFG 102


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = +1

Query: 451 QRCCYRRPNASFRLEDTLLKDSELPLVVADKFQRSTRPNRLSSSEGAQG 597
           ++CC       + +  T   D E+P+++     R   P + +    A+G
Sbjct: 795 KQCCKNCARVDYSMNGTYSADDEVPMLLHGVVPRKEIPAKSAEQILAEG 843


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 134 HPAPSHSSLNTPTL 93
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,074
Number of Sequences: 336
Number of extensions: 2655
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)