Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060774.seq
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 122 2e-28
07_01_0578 + 4295386-4296489,4297394-4297507 122 3e-28
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.11
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 31 0.75
05_03_0163 + 9070781-9071320 31 1.00
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.3
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 30 1.7
09_02_0476 + 9728729-9730739,9730930-9730991 30 1.7
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.7
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.3
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 7.0
05_03_0446 + 14111667-14111906,14112011-14112418 27 9.3
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 9.3
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 27 9.3
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 122 bits (294), Expect = 2e-28
Identities = 62/108 (57%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLR 123
Query: 435 XXXXXXXXXXPASQRFVQARGHIIERF-RASLGCSRQVPEINKTKQAV 575
A V ARGH IE L S + I KT Q++
Sbjct: 124 RIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSI 171
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 77 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 247
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY V RR
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR 60
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 122 bits (293), Expect = 3e-28
Identities = 61/108 (56%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLR 124
Query: 435 XXXXXXXXXXPASQRFVQARGHIIERF-RASLGCSRQVPEINKTKQAV 575
+ V ARGH IE L S I KT QA+
Sbjct: 125 RVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAI 172
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +2
Query: 86 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 247
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY V RR
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRR 61
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 264 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 374
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 31.1 bits (67), Expect = 0.75
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +3
Query: 213 RTRGSPTA*EGGWSQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRM 377
+ G+ + EGG S S S G++V + + R+R H G G+ G++ + GG+M
Sbjct: 65 KVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKM 123
Query: 378 FAPTKP-WR 401
P P WR
Sbjct: 124 LRPGFPKWR 132
>05_03_0163 + 9070781-9071320
Length = 179
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQG 344
GGWSQ AE WG G ++ GGG RS +G
Sbjct: 18 GGWSQR-AEGWGGGGGRSQRAEGGGGGGGRSRRG 50
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 390 SWGRTYVHHDTCYRRHPDRTYEYHH--HGHAEFGRQHVQYPMIQHWFVTSLLLT 235
SWGR H D RR P R+ +HH + +++Q+ ++ F+T+ LL+
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHHPLSPSPDNSLENLQHMQKENEFLTARLLS 354
>09_02_0476 + 9728729-9730739,9730930-9730991
Length = 690
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 198 TFLCPRTRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQG 344
+ LCP T GS WS++S++ G G A A P GGG G G
Sbjct: 126 SLLCPTTPGS------SWSKSSSD--GDGAAAAAAPAGGGGGGGGGGDG 166
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 262
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 333 TYEYHH-HGHAEFGRQHVQYPMIQH 262
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>05_03_0446 + 14111667-14111906,14112011-14112418
Length = 215
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 377 VRPHEALAALAPSRQPPTAESGLGGSVAATG 469
+RP ++LA L+P+R +A +G G + A +G
Sbjct: 114 LRPTKSLAHLSPARASSSAAAGGGSATAPSG 144
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 342 PDRTYEYHHHGHAEFGRQHVQYPMIQH 262
P + +HHHGH G H Q QH
Sbjct: 33 PQEHHHHHHHGH--HGHHHEQQQQQQH 57
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +3
Query: 231 TA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQ--GAFGNMCRGGRMFAPTKPWRR 404
TA GG S S G + GGG R G GA G + GG + WRR
Sbjct: 70 TATVGGGDDGSGHSGGRSSPPGWLRPAGGGGRRRGGHGGGAGGGVGAGG----GAEWWRR 125
Query: 405 W 407
W
Sbjct: 126 W 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,726
Number of Sequences: 37544
Number of extensions: 375618
Number of successful extensions: 1562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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