Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060774.seq
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 119 2e-27
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 119 2e-27
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 31 0.48
At5g04700.1 68418.m00478 hypothetical protein 29 1.9
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.9
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.5
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.5
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 29 2.5
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 29 2.5
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 4.4
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 5.9
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 5.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 5.9
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 27 7.8
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 119 bits (286), Expect = 2e-27
Identities = 60/108 (55%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126
Query: 435 XXXXXXXXXXPASQRFVQARGHIIERF-RASLGCSRQVPEINKTKQAV 575
A V ARGH IE L S + KT A+
Sbjct: 127 RHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAI 174
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 77 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 247
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY V ++
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 119 bits (286), Expect = 2e-27
Identities = 60/108 (55%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125
Query: 435 XXXXXXXXXXPASQRFVQARGHIIERF-RASLGCSRQVPEINKTKQAV 575
A V ARGH IE L S + KT A+
Sbjct: 126 RHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAI 173
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +2
Query: 68 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVR 241
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY V
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 242 RR 247
++
Sbjct: 61 KK 62
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 403 VGTVASTSDSGERPWRQRCCYRRPNASFRLEDTLLKDSE 519
+GTV ++ DS + P + +R+P A + + LKD++
Sbjct: 968 LGTVKASHDSAKPPGSEPILFRQPTAGLQFQQVFLKDTD 1006
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 509 KIPSFPWL*PTSSRDQQDQTGCHLLKALKAWSDILKVYK 625
K+P+ P S+RDQQ+ LLK L W+ I +VY+
Sbjct: 291 KLPTLPQP-SRSNRDQQNTLMRKLLKGLSKWTGIDEVYR 328
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 92 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 381 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 262
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 381 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 262
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 213 RTRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 374
RT EG S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 6 RTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 213 RTRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 374
RT EG S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 6 RTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEF 298
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 146 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 33
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -1
Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFVTSLLLTQ*GCLE 217
HHD + H D +++ HH H H + V+S+ + G L+
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHHHSHDHTHDPGVSSVSIVCEGSLD 361
>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
(YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
cytochrome P450 (CYP76C2), partial cds GI:13122289
Length = 512
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 552 SLELVGYNQGKLGIFQ*CVL*PERSVGTPVAATLPP 445
S++L Y+ K G+FQ V+ +VG P AA P
Sbjct: 196 SVDLGNYDSNKSGVFQDTVIGVMEAVGNPDAANFFP 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,152
Number of Sequences: 28952
Number of extensions: 255575
Number of successful extensions: 854
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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