Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060773.seq
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 72 8e-14
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 57 2e-09
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 53 4e-08
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 43 3e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 43 3e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 42 6e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 32 0.082
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 31 0.11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 30 0.33
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 1.3
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 27 1.8
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 26 4.1
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 4.1
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 5.4
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 25 7.1
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 7.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.1
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 7.1
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 25 7.1
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.4
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 25 9.4
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.4
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 9.4
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 25 9.4
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.4
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 9.4
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 71.7 bits (168), Expect = 8e-14
Identities = 33/71 (46%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 41 TEENVLVLSKANFETVI-STTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLA 217
++E+++VL NF+ ++ T+ +LVEFYAPWCGHCK+LAP Y K A + + ++S + +A
Sbjct: 353 SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYS-DDSNVVVA 411
Query: 218 KVDATQEQDLA 250
K+DAT E D++
Sbjct: 412 KIDAT-ENDIS 421
Score = 68.5 bits (160), Expect = 8e-13
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = +2
Query: 62 LSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQ 241
++K +I+ + ++V+FYAPWCGHCK+LAPEY AA +L E+ I L +VD T+E
Sbjct: 27 VNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADEL--EKDGISLVEVDCTEEG 84
Query: 242 DL 247
DL
Sbjct: 85 DL 86
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = +1
Query: 253 DYGVRGYPTLKFFRNGSPI-DYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKELID-AN 426
+Y +RGYPTL F+NG I YSG R+ D ++ +++K+ P V+ S + + ++ A+
Sbjct: 89 EYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQL-LPTVKPISKDTLENFVEKAD 147
Query: 427 TVIVFGFFSDQSSTRAKTFLSTAQVVDAKYLLLSA 531
+ V FF DQ T+ A+V+ ++ ++
Sbjct: 148 DLAVVAFFKDQKLN--DTYTEVAEVMKDDFVFAAS 180
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +2
Query: 83 TVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAE 253
T+ ++ + L+EFYA WCGHCKSLAP Y + L E+ + + + K+DA D+A+
Sbjct: 34 TIRASKKGALIEFYATWCGHCKSLAPVYEELGA-LFEDHNDVLIGKIDADTHSDVAD 89
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 50 NVLVLSKANFETVISTTEY-ILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVD 226
NV+ L NF+ V+ + +LVEFYA WCG+CK LAP Y + K+ + E +++ K++
Sbjct: 141 NVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTY-ETLGKVFKNEPNVEIVKIN 199
Query: 227 ATQEQDL 247
A D+
Sbjct: 200 ADVFADI 206
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 250 RDYGVRGYPTLKFFRNGS---PIDYSGGRQADDIISWLKKKTG 369
R + V +PT+KFF P Y G R + +I ++ KK+G
Sbjct: 208 RLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSG 250
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 52.8 bits (121), Expect = 4e-08
Identities = 25/64 (39%), Positives = 32/64 (50%)
Frame = +2
Query: 50 NVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDA 229
N + L+ NF + LV FYAPWCG+CK L P Y K A+ L P+ DA
Sbjct: 32 NTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNL-HSLLPVTAVDCDA 90
Query: 230 TQEQ 241
Q +
Sbjct: 91 DQNR 94
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/64 (29%), Positives = 39/64 (60%)
Frame = +2
Query: 59 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 238
+ S ++ + I + Y+ V+ YA WCG CK+++P +++ A+K A + AKV+ ++
Sbjct: 6 IRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYASPK--FVFAKVNVDEQ 63
Query: 239 QDLA 250
+ +A
Sbjct: 64 RQIA 67
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 259 GVRGYPTLKFFRNGSPIDYSGGR--QA--DDIISWLKKKTGPPAVEVTSAEQAK 408
GV+ PT FF NG ID G QA + + K TG A+ +S+ K
Sbjct: 71 GVKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGTGALASSSSAPVK 124
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 59 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 238
V + F++++ + ++V+F+A WCG CK++AP++ + + S KVD Q
Sbjct: 5 VSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKF----EQFSNTYSDATFIKVDVDQL 60
Query: 239 QDLA 250
++A
Sbjct: 61 SEIA 64
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 42.3 bits (95), Expect = 6e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 59 VLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQE 238
V S ++ T IS + +V+FYA WCG CK L P KL+E+ V+A +
Sbjct: 22 VESFGDYNTRISADKVTVVDFYADWCGPCKYLKP----FLEKLSEQNQKASFIAVNADKF 77
Query: 239 QDLAE 253
D+A+
Sbjct: 78 SDIAQ 82
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 31.9 bits (69), Expect = 0.082
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 101 EYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAKVDATQEQDLAET 256
+ IL+ FYAPW CK + + + A++ K++A + D+AE+
Sbjct: 21 QIILLNFYAPWAAPCKQMNQVF----DQFAKDTKNAVFLKIEAEKFSDIAES 68
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 62 LSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAE--EESPIKLAKVDATQ 235
L+ + E+ +S + +++Y P CG CK L P + K E E S +VD ++
Sbjct: 31 LTDNDLESEVSKGTWF-IKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSK 89
Query: 236 E 238
E
Sbjct: 90 E 90
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +1
Query: 250 RDYGVRGYPTLKFFRNGSPIDYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKELIDANT 429
+ Y ++ +PT FF+ + ++Y G D++S+ ++ EV + + +
Sbjct: 346 KQYSIQYFPTFLFFKEEAFVEYVGLPNEGDLVSFAEEAANFEIREVELLDTVNAEKNGDV 405
Query: 430 VIVFGFFSDQSSTRAKTFLSTA-QVVDAKYLLLSAMRK*SRSWRL 561
++ F+ D S+ T Q++ L L+ ++ ++ +R+
Sbjct: 406 FFLY-FYDDDSAEYLNIIRKTGIQLLGHANLYLTTSQQIAKKYRV 449
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 176 ATKLAEEESPIKLAKVDATQEQDLAETTVCEDTRLSSS 289
AT L++ P VDA EQD A T+ ED S
Sbjct: 44 ATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQS 81
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 485 RKVLALVELWSEKKPNTITVLASISSLACSAEVTSTA 375
+K +L + W + + LASISS A SA + ST+
Sbjct: 673 KKAASLPQFWLSPRSHNTARLASISSFAKSAVMNSTS 709
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = -1
Query: 569 FIFSLQLLDHFLIADNSKYLASTT*AVERKVLALVELWSEKKPNTITVLASISSLACSAE 390
+I SL L+ + D+ K + + + +V VLA+ E + P+ + IS ++ +
Sbjct: 312 YIVSLILIGLLISPDDPKLMGNGSASVSPFVLAIQEANIKGLPSVFNAVIIISVISVTNS 371
Query: 389 VTSTAGGPVFFFSQLMMSSA 330
T TAG + + L + A
Sbjct: 372 STYTAGRTLHGMANLKQAPA 391
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 508 AKYLLLSAMRK*SRSWRLKMKMLCFSRTSKR 600
+KYLL+SA RL + FS+TSKR
Sbjct: 304 SKYLLVSAFLASYNPSRLDAQFFSFSKTSKR 334
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = -1
Query: 569 FIFSLQLLDHFLIADNSKYLASTT*AVERKVLALVELWSEKKPNTITVLASISSLACSAE 390
F F + LL+ ++ K L AV R L+ ++ W+E+KP++ VL ++ +
Sbjct: 811 FEFLIPLLE-MILKTKHKVLEEKGQAVFRNRLSKLK-WTEEKPSSKNVLEALKKVHVLCG 868
Query: 389 VTSTAGGPVFFFSQLMM 339
++ G SQL++
Sbjct: 869 KKASLGSTGSSISQLLL 885
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 5 TRLGLALGDEVPTEENVLVLSKANFETVIS 94
TRL AL DE+ ++ +++S+A F +I+
Sbjct: 372 TRLPSALPDEIHNVDSSVIISEATFVNIIT 401
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 536 LIADNSKYLASTT*AVERKVLALVEL--WSEKKPNTITVLASISSLACSAEVTSTAGGPV 363
L+ + S +T A RK A EL WS+ PN TV ++S + E + V
Sbjct: 21 LVKELSSREGTTVFASARKPEAATELQEWSKSHPNVKTVELDVTSQQSANEAAQSVAKAV 80
Query: 362 FFFSQLMMSS 333
L ++S
Sbjct: 81 DGIDVLWLNS 90
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 164 YAKAATKLAEEESPIKLAKVDATQEQDLAETTVCEDTRLSSSSGMAVL 307
Y K A AE S +++ + Q+QD + C D + + M L
Sbjct: 174 YEKVADTFAERRSLLEMQEPLTEQQQDFLNNSTCVDKVMENRYTMQFL 221
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 304 PIDYSGGRQADDIISWLKKKTGPPAVEVTSAEQAKELIDANTVIVFGF-FSDQSSTRA 474
P DY ++ D + ++ G P++ ++ K ++++ TV VFG F Q RA
Sbjct: 291 PWDYDFTKETYDGL-FISNGPGDPSLMDLVVDRVKRVLESKTVPVFGICFGHQIMARA 347
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 319 GGRQADDIISWLKKKTGPPAVEVTSAEQAKELIDANTVIVFGFFSD-QSSTRAKTFLSTA 495
GGR D + +K+G V E +E+ + + F S+ +S T K + T
Sbjct: 186 GGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTY 245
Query: 496 QVVDAKYLLL 525
Q+ D + + L
Sbjct: 246 QLPDNQTITL 255
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 161 EYAKAATKLAEEESPIKLAKVDATQEQDLAETTVCEDTRLSSS 289
EY +A + EEE ++ + ATQE + + E TR SS
Sbjct: 44 EYPEAGPLVQEEEDDMESSSYHATQEDIGDDDSRSESTRNRSS 86
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 65 SKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKLAK 220
+K N +T S T+++ Y WCGH YA +L PI L++
Sbjct: 214 TKLNNDTN-SETDFLGYNMYE-WCGHSDFYTSGYAARTQELENFTIPIFLSE 263
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 307 IDYSGGRQADDIISWLKKKTGPPAVEVTSAEQA 405
++ SGG + D +I W+ K TG A ++ +A
Sbjct: 389 VNNSGGPKFDIVIPWIGKPTGFHASTISEYAEA 421
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 256 YGVRGYPTLKFFRNGSPIDYSG--GRQADD---IISWLKKKTGPPAVEVT 390
YG + P++ RNG PI Y R+ D I W+ + P E+T
Sbjct: 347 YGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELT 396
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 408 FSLFSRGNLNSRGASLLLQPTDDVISLTTT*IVNRT 301
F S+GNL+ SLL +D+V +TTT +V+ T
Sbjct: 304 FEFDSKGNLD---VSLLKSLSDEVNMITTTSLVDNT 336
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 384 LNSRGASLLLQPTDDVISLTTT*IVNRTAIPEELESRVS 268
L+ RG + QPTDD L T+ ++ R + LE +V+
Sbjct: 127 LSKRGGPSMFQPTDDCAYLGTSYVLIRL---QSLEGKVA 162
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 140 HCKSLAPEYAKAATKLAEEESPIKLAKVDA 229
+C L P +AA L + +SP L VDA
Sbjct: 183 YCAYLVPNEHEAAILLNQADSPATLENVDA 212
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +2
Query: 44 EENVLVLSKANFETVISTTEYILVEFYAPWCGHCKSLAPEYAKAATKLAEEESPIKL 214
+ENV ++ K+N+ + +T E + + + G+ ++ P YA ++ ++S K+
Sbjct: 4 KENVNLVEKSNYVALENTREIDVFDEFLNAIGNENTITPVYADSSLTHLRKKSYTKV 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,477
Number of Sequences: 5004
Number of extensions: 48415
Number of successful extensions: 180
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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