Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060770.seq
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   5.3  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.0  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.2  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.2  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.2  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 266  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 358
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 334 GPNASNHSLYRMRLF*NFISTPAILRELRTEPATRWFD*SFAPIPSSDDRF 182
           GP  +NHS        + + T + LR     P + + +  F P+PSSDD F
Sbjct: 160 GPVRTNHSSSLSNSSNSLLQTESSLR-----PNSSFVNSPFFPLPSSDDLF 205


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 491 LGALKLRLVHPTAPVLLTKIG 429
           +G  +LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 361 FKWVRTPAYSNDEAGDL 411
           F  ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 102 VPAFVLRARLHSLIGNETPRECENH 28
           VP FV    LH   G++TP  C  H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 188 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 84
           S  TS S ++SI  S   + + HSSPSF  + L S
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFS 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,737
Number of Sequences: 5004
Number of extensions: 60447
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)