Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060770.seq
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.47 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 391  NDEAGDLMTVPSGPILVSRTGA 456
            ND+  D +T P  P+ +SR G+
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGS 1408


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 216 LSPLYPVPTID 184
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 216 LSPLYPVPTID 184
           LSP+YP P +D
Sbjct: 71  LSPIYPSPMVD 81


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 208 PIPSSDDRFARQNRYGPPSGFP 143
           P  S  ++  R    GPP+ FP
Sbjct: 364 PFVSIQEQIPRLRYIGPPTSFP 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,286
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)