Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060770.seq
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    31   0.65 
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.0  
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    29   2.6  
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    28   6.0  

>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
            similar to GI:11993492; RNA binding protein - Homo
            sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
            carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 118  LCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 222
            +C VR K     M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKEAPKAMLEASDSSFEVDRRTSKRSRRTN 962


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 428 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 333
           P  +V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to SP|Q9EPU4 Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit) {Mus musculus}; contains Pfam profile PF03178:
            CPSF A subunit region
          Length = 1442

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -3

Query: 464  HPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFENRLRSFRPQCL*SFALPDETVLK 285
            H T P L   +   GT++   A  F+  GV    K EN L S  P  L S        LK
Sbjct: 856  HHTRPFLFAVLAD-GTILCYHAYLFD--GV-DSTKAENSLSSENPAALNSSGSSKLRNLK 911

Query: 284  FY---IDASYPEGTSDGTS 237
            F    +D S  EGTSDG +
Sbjct: 912  FLRIPLDTSTREGTSDGVA 930


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
           Plant protein of unknown function (DUF869)
          Length = 982

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 546 WPWKSESAKECATTSPAEATSPENG 620
           WPWK +S+++ AT +  E    ENG
Sbjct: 6   WPWKKKSSEKTATVT--EVVDQENG 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,062
Number of Sequences: 28952
Number of extensions: 332898
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)