Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    30   0.25 
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   2.3  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   2.3  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   7.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   7.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.5  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
 Frame = +2

Query: 104 TVSASYRKVLSVIRESRYVTRDP-NEACLFVPAIDTLDADPLSSEHVSD-VAYVY---RD 268
           TV+ +  K +S +R S+   ++  N  C  + A DT+ A+P+  +HV + +A  Y   + 
Sbjct: 106 TVTGNQDKPISRLRASKLQIQNFWNYICFELLANDTVPANPIKEKHVENFLATPYAIEKT 165

Query: 269 YLIGEMVEIISYLIYMLAL 325
           +L G  V + S+L Y+  L
Sbjct: 166 FLFGWFVSVDSFL-YIFTL 183


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 170 PNEACLFVPAIDTLD-ADPLSSEHVSDVAYVYRD 268
           P +  L  PA++TL   +P++ EH+S ++ +Y++
Sbjct: 145 PLKPILLAPAMNTLMWTNPITQEHLSAISRIYKN 178


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 168 SLVTYLDSLITDNTFLYEALTVPSL--GYTKIFGSLPHLEKSK 46
           S +TY   ++ D+ F    L V     G T +FG+L HLE  K
Sbjct: 88  STITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLEAKK 130


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 489 QPISGSTKHLVAFKGKRY 542
           QP+S S KHL A K K Y
Sbjct: 45  QPVSFSKKHLQALKEKNY 62


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 513 HLVAFKGKRYVHGYWVVKXRNSLWHLHDGNNLIL 614
           H + FKG    HG  +V+   SL H  +G  + +
Sbjct: 425 HQLGFKGISLSHGKEIVRYLRSLGHEKEGQGVFM 458


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 539  SFSFEGYQMLS*AGNGLTVAAGGTPPFSGCSL*NNGNEMSNPSRN 405
            S   +G  +L+ +GNG  +  G  P  +G S    GN+ +  +RN
Sbjct: 1357 SIGKKGKNLLNESGNGKKLDKGLPPKVNGKSSVTRGNKTNLKARN 1401


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   VLLQHSLVVWIHVSTFLNVEVIQKFLCTQVMGLSVL 116
           +LL   L   +H+  F   + I KFLCT   G ++L
Sbjct: 50  ILLTSWLNRSVHIEIFDERKFIGKFLCTDREGAAIL 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,468
Number of Sequences: 5004
Number of extensions: 62849
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)