Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0020 + 11303438-11304213,11304321-11304699                       29   3.2  
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825...    29   3.2  
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377...    28   5.6  
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864...    27   9.8  
02_01_0650 - 4838977-4839078,4839179-4839196,4839371-4839528,483...    27   9.8  

>08_02_0020 + 11303438-11304213,11304321-11304699
          Length = 384

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 265 RLPYWRNGRNHLIFNLYAGTWPDYA 339
           R+P  R+G  H++ NLY G W DYA
Sbjct: 256 RMPRIRHGYAHVVNNLYDG-WRDYA 279


>04_04_0486 -
           25582072-25582283,25582366-25582420,25582503-25582559,
           25582674-25582765,25583148-25583280,25583357-25583434,
           25583531-25583676,25583702-25583749,25583804-25584011,
           25584154-25584220,25584441-25584499
          Length = 384

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 174 FGSLVTYLDSLITDNTFLYEALTVPSLGY 88
           FGS+  +L + ITD+  +Y +++ PSL Y
Sbjct: 34  FGSIRYHLQASITDSENIYLSISTPSLSY 62


>11_01_0488 +
           3770410-3770774,3771197-3771284,3771383-3771466,
           3772128-3772224,3772324-3772411,3772800-3772848,
           3773044-3773238,3773713-3774159
          Length = 470

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 215 ADPLSSEHVSDVAYVYRDYLIGEMVEIISYLIYMLALGQTMLKILWDLTQVKL 373
           A P S E   D  Y +      E  E  + +    ++GQ    +LWDLT+ +L
Sbjct: 284 ASPKSDEAEEDPIYSFASPKSDETKENTNIMYRFASIGQDAQLLLWDLTKDEL 336


>12_02_1066 +
           25785749-25785868,25785953-25786141,25786250-25786414,
           25786649-25786999,25787924-25788001,25788137-25788277,
           25788415-25788459,25788597-25788763,25788833-25788911,
           25788985-25789067,25789219-25789348,25789432-25789564,
           25789955-25790103,25790339-25790534,25791086-25791288
          Length = 742

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 96  LGYTKIFGSLPHLEKSKHV 40
           +GY  IFG LP LE  K V
Sbjct: 678 IGYASIFGELPKLESKKDV 696


>02_01_0650 -
           4838977-4839078,4839179-4839196,4839371-4839528,
           4839663-4839895,4840345-4840631,4841391-4841819
          Length = 408

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 71  DPKIFVYPSDGTVSASYRK---VLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHV 241
           DPK F Y +   ++  Y         IRESR+ T DP++A LF   I         + + 
Sbjct: 90  DPKTF-YQTPRKLTGKYASEGYFFQNIRESRFRTGDPDKAHLFFVPISPHKMRGKGTSY- 147

Query: 242 SDVAYVYRDYLIG 280
            ++  + +DY+ G
Sbjct: 148 ENMTIIVKDYVEG 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,887
Number of Sequences: 37544
Number of extensions: 399708
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)