Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   4e-25
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             44   1e-04
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          32   0.35 
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_58138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score =  111 bits (268), Expect = 4e-25
 Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
 Frame = +1

Query: 256 RLSRLPYWRNGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLP 435
           ++ +LPYW+NG NH+IFNL+AGTWPDY+ED +GFD G+AIL +AS S  + R GFD+SLP
Sbjct: 164 KIRQLPYWKNGENHIIFNLFAGTWPDYSED-VGFDFGKAILVKASLSSDLIRPGFDVSLP 222

Query: 436 LFHKEHPEK--GGVPPAATVNPFPAQLSIW*PSKEKDMYMGIG**XPVILCGIYM-MEIT 606
           LF K HP K  G +P + +   FP +       K K    GIG      L  I+   +I 
Sbjct: 223 LFPKTHPHKDLGNLPHSCSA--FPLERKYKLAFKGKRYLNGIGSESRNALYHIHNGRDIV 280

Query: 607 *S**PTCRHGKSW 645
                TC+HGK+W
Sbjct: 281 LL--TTCKHGKAW 291



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
 Frame = +2

Query: 29  CRMDTCFDFSKCGSDPKIFVYP--SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAI 202
           C M+TCFD +KC SD +I+VYP      +S +Y  ++ VI+ESRY T  P EACLF+ AI
Sbjct: 86  CTMETCFDKTKCLSDFRIYVYPVHPGAKLSTTYTNIIKVIKESRYYTEFPEEACLFITAI 145

Query: 203 DTLDADPLSSEHVSDV 250
           DTLD D LS+++V ++
Sbjct: 146 DTLDRDKLSADYVHNI 161


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 LSRLPYWR-NGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLP 435
           L+ L  W+ +G+NHLIFN+  G  PD+    L    G+AI A  S S   +R GFD  +P
Sbjct: 157 LAALETWKYSGQNHLIFNMLPGGPPDF-NSILDVPLGKAIQAGGSMSTQTYRPGFDGCIP 215

Query: 436 L 438
           +
Sbjct: 216 I 216



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
 Frame = +2

Query: 29  CRMDTCFDFSKC----GSDPKIFVYPSD------------GTVSASYRKVLSVIRESRYV 160
           CRM +CFD  +C     S   ++VYP                +S  + ++L+ I+ES Y 
Sbjct: 67  CRMHSCFDIYRCRFNENSLISVYVYPYSTFLNEKGRTLNLKPISVHFDEMLTAIKESSYY 126

Query: 161 TRDPNEACLFVPAIDTLD 214
           T D ++AC+ +P +D L+
Sbjct: 127 TDDKDKACIIIPPLDILN 144


>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 427 SLPLFHKEHPEKGGVPPAAT---VNPFPAQLSIW*P 525
           S P   + +PEKGG PPA       P+P Q  +W P
Sbjct: 174 SYPQGQEPYPEKGGYPPAGVGQHSGPYPGQPGMWGP 209


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 529 LKATKCLVEPEMGXXXXQVELLLSLDVLYEIMAMKCQIPHETLFRKH 389
           LKA K  +         ++   L L ++  +  M+C+IPH  + RK+
Sbjct: 421 LKAEKAALSSSWAKRNDRLHQGLDLQIVLRVHHMRCEIPHRCVRRKY 467


>SB_58138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 286 GRNHLIFNLYAGTWPDYAEDSLGFDP 363
           GR HL+F L A TW D    S G+ P
Sbjct: 7   GRCHLVFRLQARTWEDVISSS-GYRP 31


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 122 RKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHVS 244
           RK+  VI+   ++ R P+ +CL   + D  D D L+SE V+
Sbjct: 160 RKLAKVIKT--FLRRQPSPSCLVAHSGDRFDFDILASEFVN 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,488,426
Number of Sequences: 59808
Number of extensions: 445178
Number of successful extensions: 1152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)