Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    92   3e-19
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    92   3e-19
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    92   3e-19
AL132860-9|CAB60524.1|  647|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 39/60 (65%), Positives = 48/60 (80%)
 Frame = +1

Query: 277 WRNGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLPLFHKEHP 456
           W NGRNHLIFN Y GT+PDY + +L FD GEA++ARAS+SE  F + FD+SLPLFH+ HP
Sbjct: 120 WNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPLFHENHP 179



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +2

Query: 29  CRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFV 193
           C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+
Sbjct: 30  CTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFL 89

Query: 194 PAIDTLDADPLSSEHVSDV 250
             IDT D D  S  +V +V
Sbjct: 90  LGIDTTDRDVRSQNYVKNV 108



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 495 ISGSTKHLVAFKGKRYVHGYWVVKXRNSLWHLHDGNNLILVT---HLPSWKILE 647
           I    K+LV+FKGKRYV+G      RN + HLH+G+++++VT   H   W++ +
Sbjct: 194 IENQRKYLVSFKGKRYVYGIG-SGTRNLVHHLHNGDDIVMVTTCKHNNDWQVYQ 246


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 39/60 (65%), Positives = 48/60 (80%)
 Frame = +1

Query: 277 WRNGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLPLFHKEHP 456
           W NGRNHLIFN Y GT+PDY + +L FD GEA++ARAS+SE  F + FD+SLPLFH+ HP
Sbjct: 116 WNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPLFHENHP 175



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +2

Query: 29  CRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFV 193
           C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+
Sbjct: 26  CTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFL 85

Query: 194 PAIDTLDADPLSSEHVSDV 250
             IDT D D  S  +V +V
Sbjct: 86  LGIDTTDRDVRSQNYVKNV 104



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 495 ISGSTKHLVAFKGKRYVHGYWVVKXRNSLWHLHDGNNLILVT---HLPSWKILE 647
           I    K+LV+FKGKRYV+G      RN + HLH+G+++++VT   H   W++ +
Sbjct: 190 IENQRKYLVSFKGKRYVYGIG-SGTRNLVHHLHNGDDIVMVTTCKHNNDWQVYQ 242


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 39/60 (65%), Positives = 48/60 (80%)
 Frame = +1

Query: 277 WRNGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLPLFHKEHP 456
           W NGRNHLIFN Y GT+PDY + +L FD GEA++ARAS+SE  F + FD+SLPLFH+ HP
Sbjct: 120 WNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPLFHENHP 179



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +2

Query: 29  CRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFV 193
           C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+
Sbjct: 30  CTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFL 89

Query: 194 PAIDTLDADPLSSEHVSDV 250
             IDT D D  S  +V +V
Sbjct: 90  LGIDTTDRDVRSQNYVKNV 108



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +3

Query: 495 ISGSTKHLVAFKGKRYVHGYWVVKXRNSLWHLHDGNNLILVT---HLPSWKILE 647
           I    K+LV+FKGKRYV+G      RN + HLH+G+++++VT   H   W++ +
Sbjct: 194 IENQRKYLVSFKGKRYVYGIG-SGTRNLVHHLHNGDDIVMVTTCKHNNDWQVYQ 246


>AL132860-9|CAB60524.1|  647|Caenorhabditis elegans Hypothetical
           protein Y56A3A.12a protein.
          Length = 647

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 366 TWVKSQRIFSIVWPS 322
           TW  SQRIFS++WP+
Sbjct: 8   TWSPSQRIFSLIWPA 22


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +1

Query: 301 IFNLYAGTW---PDYAEDSLGFDPGEAILARASASEIMFREGFDISLPLFHKEHPEKGGV 471
           + NL AG     PDY    +  D   A+L + S SE+  R   ++  P    +  + GGV
Sbjct: 307 LVNLIAGGQIDAPDYRVYPV--DQASAVLKQLSMSEVEGRAILEVCDPSSALDADQSGGV 364

Query: 472 P-PAAT 486
           P PAAT
Sbjct: 365 PIPAAT 370


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 226 VIRTCI*CRLRLSRLPYWRN 285
           V+ TC+ C  ++SR+P+++N
Sbjct: 444 VLSTCVTCGYKISRIPFYKN 463


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 426 NVKSLTKHYFGSTCSGQYSFTW 361
           N +S    YFG+ C+  YSF W
Sbjct: 129 NFESKQIRYFGNMCTFSYSFAW 150


>Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK1037.6 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 129 TFLYEALTVPSLGY-TKIFGSLPHLEKSKHVSIRQGCV 19
           + ++ +  +P+L   ++I+G   H+E S H S  +GC+
Sbjct: 426 SLIFSSSNLPTLNLVSEIYGDAVHIEFSTHDSYSEGCL 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,482
Number of Sequences: 27780
Number of extensions: 349041
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)