Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 36  NAWLKLEWVDYNLQWNES 53


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 104 NAWLKLEWVDYNLQWNES 121


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 516 NA*LSRKWVDSSSRWNSS 463
           NA L  +WVD + +WN S
Sbjct: 104 NAWLKLEWVDYNLQWNES 121


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 344 ILWDLTQVKLYWPEQVLPK 400
           I ++LT VKL WP++ + K
Sbjct: 211 IYYNLTMVKLNWPKKRVTK 229


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 649 LSKIFHDGKWVTRIKLFPSCKCHKELRXFTTQYPCTYLFPLKATKCL 509
           L +I  DG  +  ++L    KC  ELR F        L  L + KC+
Sbjct: 141 LLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLI-LGSCKCI 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,968
Number of Sequences: 438
Number of extensions: 4027
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)