Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060769.seq
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    29   2.0  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    29   2.7  
At5g06440.2 68418.m00722 expressed protein similar to unknown pr...    29   3.5  
At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    29   3.5  
At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger) fa...    27   8.2  

>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -1

Query: 473 GTPPFSGCSL*NNGNEMSNPSRNIISEALALANIASPGSNPKESSA*SGQVPAYKLN 303
           G+ PF+G ++   G+E S   +NII+E + L+N+   G N K +    G +   K++
Sbjct: 279 GSSPFAGIAI---GSETSGGIKNIIAEHITLSNM-GVGVNIKTNIGRGGYIKNIKIS 331


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +2

Query: 71  DPKIFVYPSDGTVSASYRK---VLSVIRESRYVTRDPNEACL-FVP-AIDTLDADPLSSE 235
           DP  F Y +   V+  Y         IRESR+ T DP+EA L F+P +   +     S E
Sbjct: 113 DPNTF-YQTPRKVTGKYASEGYFFQNIRESRFRTLDPDEADLFFIPISCHKMRGKGTSYE 171

Query: 236 HVSDVAYVYRDYLIGE 283
           +++ +   Y D LI +
Sbjct: 172 NMTVIVQNYVDGLIAK 187


>At5g06440.2 68418.m00722 expressed protein similar to unknown
           protein (gb|AAF23188.1)
          Length = 479

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/64 (26%), Positives = 25/64 (39%)
 Frame = +2

Query: 206 TLDADPLSSEHVSDVAYVYRDYLIGEMVEIISYLIYMLALGQTMLKILWDLTQVKLYWPE 385
           T D D      + D   +YR+ L G     +    YM       L + W+ T  K +WP+
Sbjct: 73  TNDGDWKLKHDLEDCRVMYREGLDGSPFHTLLVEGYMDGPIHECLCVSWESTLYKKWWPQ 132

Query: 386 QVLP 397
              P
Sbjct: 133 YAFP 136


>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 224 LSSEHVSDVAYVYRD-YLIGEMVEI-ISYLIYMLALGQTMLKILWDLTQVKLYW 379
           L S  V   A VY D Y +G  V I I+++  +L+L  ++L I W   +V  +W
Sbjct: 339 LGSALVMQTANVYPDAYKLGFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFW 392


>At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 207

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 402 YFGSTCSGQYSFTWVKSQRIFSIVWPSAS 316
           YF ST  G Y +   +S+++ S++ PS+S
Sbjct: 41  YFYSTTGGSYEYEGDQSRKVSSVMSPSSS 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,886
Number of Sequences: 28952
Number of extensions: 328699
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)