Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060768.seq
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41417 Cluster: Late expression factor 1; n=14; Nucleop...    95   1e-18
UniRef50_Q65343 Cluster: Lef-1 protein; n=1; Autographa californ...    38   0.14 
UniRef50_P41423 Cluster: Uncharacterized 38.7 kDa protein in PK1...    35   1.3  
UniRef50_Q91BA5 Cluster: Late expression factor 1; n=3; Nucleopo...    34   2.3  
UniRef50_Q77SA9 Cluster: Late expression factor 1; n=5; Nucleopo...    32   7.2  
UniRef50_Q599G0 Cluster: Lef1 protein; n=2; unclassified Nucleop...    32   7.2  
UniRef50_A1YJ08 Cluster: Late expression factor 1; n=4; Nucleopo...    32   9.5  

>UniRef50_P41417 Cluster: Late expression factor 1; n=14;
           Nucleopolyhedrovirus|Rep: Late expression factor 1 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 266

 Score = 94.7 bits (225), Expect = 1e-18
 Identities = 40/44 (90%), Positives = 41/44 (93%)
 Frame = +3

Query: 9   AHCXRXAVRXYIPHMQDSNLDALTLQYWPDVDRDIFCNVNKQIR 140
           AHC R AVR Y+PHMQDSNLDALTLQYWPDVDRDIFCNVNKQIR
Sbjct: 162 AHCVREAVRLYVPHMQDSNLDALTLQYWPDVDRDIFCNVNKQIR 205



 Score = 52.0 bits (119), Expect = 8e-06
 Identities = 35/77 (45%), Positives = 38/77 (49%)
 Frame = +1

Query: 115 FVTLTNKYDAPYSYNYKGTKFSRLYNKGNXLDKLKQCYXWLWNWWMXXGEQTTTNDNDAG 294
           F  +  +  APYSYNYKGTKFSR   K   LDKLKQCY          G  TTT      
Sbjct: 197 FCNVNKQIRAPYSYNYKGTKFSRCITK-ELLDKLKQCYPGYGTG--GCGPVTTTT----- 248

Query: 295 HSARPKXXVRCQTTTKS 345
            +  P      QTTTKS
Sbjct: 249 -TPSPPKIGSMQTTTKS 264


>UniRef50_Q65343 Cluster: Lef-1 protein; n=1; Autographa californica
           nucleopolyhedrovirus|Rep: Lef-1 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 50

 Score = 37.9 bits (84), Expect = 0.14
 Identities = 19/27 (70%), Positives = 19/27 (70%)
 Frame = -1

Query: 220 ALICLXNSLCYTTEKI*FPYNYSCTVR 140
           AL CL   L Y  EKI FPYNYSCTVR
Sbjct: 21  ALACLAIPLLYN-EKISFPYNYSCTVR 46


>UniRef50_P41423 Cluster: Uncharacterized 38.7 kDa protein in
           PK1-LEF1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 38.7 kDa
           protein in PK1-LEF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 327

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 WLWNWWMXXGEQTTTNDNDA 291
           WLWNWWM  G+    NDNDA
Sbjct: 4   WLWNWWMWSGD----NDNDA 19


>UniRef50_Q91BA5 Cluster: Late expression factor 1; n=3;
           Nucleopolyhedrovirus|Rep: Late expression factor 1 -
           Spodoptera litura multicapsid nucleopolyhedrovirus
           (SpltMNPV)
          Length = 231

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +1

Query: 130 NKYDAPYSYNYKGTKFSRLY 189
           N+  APYSYNYKG KFS  Y
Sbjct: 209 NQIRAPYSYNYKGQKFSEDY 228


>UniRef50_Q77SA9 Cluster: Late expression factor 1; n=5;
           Nucleopolyhedrovirus|Rep: Late expression factor 1 -
           Ecotropis obliqua NPV
          Length = 242

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +3

Query: 66  LDALTL--QYWPDVDRDIFCNVNKQIR 140
           +DA TL   +WP VD+ IFCN+N QIR
Sbjct: 200 VDASTLIKDFWPAVDKHIFCNLN-QIR 225


>UniRef50_Q599G0 Cluster: Lef1 protein; n=2; unclassified
           Nucleopolyhedrovirus|Rep: Lef1 protein - Euproctis
           pseudoconspersa nucleopolyhedrovirus
          Length = 237

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 57  DSNLDALTLQYWPDVDRDIFCNVNKQIR 140
           D  L  L  ++WP VD  +FCN N QIR
Sbjct: 194 DDRLKKLMHEFWPTVDAHVFCNFN-QIR 220


>UniRef50_A1YJ08 Cluster: Late expression factor 1; n=4;
           Nucleopolyhedrovirus|Rep: Late expression factor 1 -
           Spodoptera frugiperda nuclear polyhedrosis virus (SfNPV)
          Length = 239

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  DALTLQYWPDVDRDIFCNVNKQIR 140
           D   L +WP+VD+ +FCN N QIR
Sbjct: 196 DKPLLYWWPNVDKHVFCN-NSQIR 218


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,033,149
Number of Sequences: 1657284
Number of extensions: 6816716
Number of successful extensions: 13928
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13924
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)