Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060768.seq
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   3.1  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    25   5.4  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    25   9.4  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   9.4  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 70  TRSRCSIGRTWTGIFFVTLTNKYDAPYSYNYKGT 171
           T S  SI R+W   FFV   +     Y ++Y+ T
Sbjct: 367 TTSDMSIIRSWKNSFFVAAASNKGTIYVFSYQNT 400


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 163 YNYSCTVRRICLLTLQKISLSTSGQYCNVSASKFESCI 50
           ++ S    + CL+    + L    QYC     + ESC+
Sbjct: 77  FHSSSIYNKRCLMAYHNLRLQRLRQYCWSGGKRMESCL 114


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  DSNLDALTLQYWPDVDRDIFCNVNKQIRRTVQL 155
           D  +  L++   PD+D  +FC VN+ +    ++
Sbjct: 149 DDKVGNLSMVASPDMDTAVFCVVNESVEENFRV 181


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +3

Query: 339 KKXPX-IKTFQTIGSXTFVKWDSXQMAISDXSCASHXI 449
           +K P  I   +  G  TF+ WD    A  D  CA   I
Sbjct: 400 RKHPGKINNLRGKGKGTFIAWDCESPAARDKFCADMRI 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,825
Number of Sequences: 5004
Number of extensions: 29896
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)