Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060768.seq
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            28   4.2  
SB_44815| Best HMM Match : Pepsin-I3 (HMM E-Value=4.4)                 28   5.5  
SB_34267| Best HMM Match : Ribosomal_L16 (HMM E-Value=4.2)             28   5.5  
SB_598| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.5  
SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_7285| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 398 GFIXNGNQRXQLCKSXDNVATXDHRNXKN 484
           GF+ + N+R QL  S D  +T D R  KN
Sbjct: 457 GFLTDRNKRSQLVPSVDTSSTVDSRPQKN 485


>SB_44815| Best HMM Match : Pepsin-I3 (HMM E-Value=4.4)
          Length = 152

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 201 IPFVIQPRKFSSLIIIAVRCVVFVC*RYKKYPCPRPANTAT*ARPSLNLAYAEC 40
           +P+V+QPR F + +     C +F   + KK        T T A+ S NLA   C
Sbjct: 18  VPYVVQPRSFETSLQQRTPCGLFNTPKNKK-----TNTTLTRAQNSSNLAIGTC 66


>SB_34267| Best HMM Match : Ribosomal_L16 (HMM E-Value=4.2)
          Length = 208

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 201 IPFVIQPRKFSSLIIIAVRCVVFVC*RYKKYPCPRPANTAT*ARPSLNLAYAEC 40
           +P+ +QPR+F + +     C +F   + KK        T T A+ S NLA   C
Sbjct: 74  VPYAVQPRRFETSLYQRTPCGLFNTPKNKK-----TNTTLTRAQNSSNLAIGTC 122


>SB_598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 201 IPFVIQPRKFSSLIIIAVRCVVFVC*RYKKYPCPRPANTAT*ARPSLNLAYAEC 40
           +P+ +QPR+F + +     C +F   + KK        T T A+ S NLA   C
Sbjct: 19  VPYAVQPRRFETSLYQRTPCGLFNTPKNKK-----TNTTLTRAQNSSNLAIGTC 67


>SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 400 SHLTNVXEPIVWNVLMXGYFL*SSGIEPXXSVXPNGRRRCRS 275
           S L ++  P+++N L   YFL S  +        NGRR  R+
Sbjct: 150 SSLLHLGIPVLFNRLSVTYFLESEALHVAADACRNGRRHVRT 191


>SB_7285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 201 IPFVIQPRKFSSLIIIAVRCVVFVC*RYKKYPCPRPANTAT*ARPSLNLAYAEC 40
           +P+ +QPR F + +     C +F   + KK        T T A+ S NLA   C
Sbjct: 11  VPYAVQPRSFETSLQQRTPCGLFTTPKNKK-----TNTTLTRAQNSSNLAIGTC 59


>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 201 IPFVIQPRKFSSLIIIAVRCVVFVC*RYKKYPCPRPANTAT*ARPSLNLAYAEC 40
           +P+ +QPR+F + +     C +F   + KK        T T A+ S NLA   C
Sbjct: 19  VPYAVQPRRFETSLQQRTPCGLFNTPKNKK-----TNTTLTRAQNSSNLAIGTC 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,940
Number of Sequences: 59808
Number of extensions: 235156
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)