Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060768.seq
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125959-2|AAD14732.1|  531|Caenorhabditis elegans Udp-glucurono...    30   1.2  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    27   8.5  

>AF125959-2|AAD14732.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein8 protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 100 WTGIFFVTLTNKYDAPYSYNYKGTKFSRLYNKGNXLDKLKQCY 228
           W+ + F    N +  P S  Y    FS+L  +   +D+L   Y
Sbjct: 169 WSAVRFTIFNNIFGQPSSLGYSQQPFSKLAPEAGFIDRLNDVY 211


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 33  RXYIPHMQ-DSNLDALTLQYWPDVDRDIFCNVNK 131
           R Y+P++  D + D++T   WP  D D+F    K
Sbjct: 314 RPYLPYVTYDEHRDSVTDACWPSTDFDVFMTCGK 347


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 55  KIQTWTRSRCSIGRTWTGIFFVTLTNKYDAPYSYNYKGTKFSRLYNKG 198
           K+  W       G  W+   +  L   +   YSYNY  T+F  +YN G
Sbjct: 133 KLVFWVFYVIFFGFAWSASVYFCL---FPDTYSYNYIRTEFKDVYNIG 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,987
Number of Sequences: 27780
Number of extensions: 174794
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)