Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060768.seq
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   4.5  
At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger) fa...    27   5.9  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    27   5.9  

>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 58  IQTWTRSRCSIGRTWTGIFFVTLTNK 135
           ++TW R+ C  G  WT I F   T +
Sbjct: 452 VKTWKRTNCMEGLNWTKIKFFATTGE 477


>At5g47610.1 68418.m05876 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 330 DDYKKXPXIKTFQTIGSXTFVKWDSXQMAISDXSCASHXITWQQXITETXRISTKCQXAF 509
           DD+K  P      T  + T V     ++A ++  CA     ++Q   E+ ++  KCQ  F
Sbjct: 73  DDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQG--ESIQVLEKCQHGF 130

Query: 510 LAK 518
             K
Sbjct: 131 HVK 133


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -3

Query: 188 YNRENLVPL*L*LYGASYLFVNVTKNIPVHVRPILQRE 75
           ++R+++  L + LY ASYL   + KN+ + +RP   ++
Sbjct: 170 FDRDDIYGL-ISLYEASYLSTKLDKNLQIFIRPFATQQ 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,258
Number of Sequences: 28952
Number of extensions: 155981
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)