Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060767.seq
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.75 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   2.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 455 RRNSGGGTVYHDRGNLNIHSLPHVRDMTEI 544
           R   GGGT Y    NLNI     V++  +I
Sbjct: 108 RPRPGGGTKYQTFSNLNISGFGGVQESGDI 137


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -3

Query: 359 TPS*HDDL*SPCSYTTNPPEPSSYKYQSIET*TLTGDLPLSWKHSLLF*CGHFAGCRNIS 180
           +PS  DDL      +TNP  P  Y YQ I    L  D  +    SL+     F G +++S
Sbjct: 134 SPSTTDDL------STNPTPPPHYTYQIIPYEALNVDDHILSDPSLMDADLEFKGAQDLS 187

Query: 179 YI 174
            +
Sbjct: 188 LL 189


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 FFSP*LEPSFTCFVNVFFTSRL 61
           FF    +P+F+ F+ VFFT  L
Sbjct: 155 FFKSSKKPAFSHFLIVFFTETL 176


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 FFSP*LEPSFTCFVNVFFTSRL 61
           FF    +P+F+ F+ VFFT  L
Sbjct: 155 FFKSSKKPAFSHFLIVFFTETL 176


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 FFSP*LEPSFTCFVNVFFTSRL 61
           FF    +P+F+ F+ VFFT  L
Sbjct: 155 FFKSSKKPAFSHFLIVFFTETL 176


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 FFSP*LEPSFTCFVNVFFTSRL 61
           FF    +P+F+ F+ VFFT  L
Sbjct: 155 FFKSSKKPAFSHFLIVFFTETL 176


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 404 WLEANVPLLSEKEIALARRNSGGGTVYHDRGNLNIHSL 517
           WL  N+  +++   A     +GGG+V    G++NI ++
Sbjct: 10  WLAFNLASIAQDPSASVDAATGGGSVL---GDVNISAI 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,908
Number of Sequences: 336
Number of extensions: 3805
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)