Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060767.seq
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 92 6e-20
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 1.4
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 2.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.3
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 5.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 5.7
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 7.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.5
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.5
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 25 9.9
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.9
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 92.3 bits (219), Expect = 6e-20
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 260 VFMSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWLEANVPLLSEK 439
V + +S + Y NLALE++LY+N T H ++++ N P V+IGR+QNPW+EANV L +
Sbjct: 27 VVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQNPWVEANVKLCRDN 84
Query: 440 EIALARRNSGGGTVYHDRGNLN 505
+ + RR SGGGTV+HD GNLN
Sbjct: 85 FVNIIRRKSGGGTVFHDFGNLN 106
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +2
Query: 224 ESASN*GGDHQSVFMSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNP 403
E+ S G H++VF+ + I+ L+++ + FT ++ N P ++ R +
Sbjct: 808 EAMSILAGGHRNVFVKSTCPIFFQKQLDNYKADHYCFTLDFILTDCVNSPKPLLRRASSL 867
Query: 404 WLEANVPLLSEKEIALARRNSGGGTVYH 487
WL V + + R N +YH
Sbjct: 868 WLFYIVRYCEPQTYTMTRLND----IYH 891
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 332 SPCSYTTNPPEPSSYKYQSIET*TLTGDLPLSW 234
S C Y TN P+SY S E LT D LS+
Sbjct: 337 SGCDYATNVTCPNSYTAVSYEMMALTDDSYLSF 369
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 62 NLDVKKTLTKQVKDGSSYGEKNSIQQCLHICWSCTENIYKK 184
+L ++KT+T+ + ++Y + LH+C N+ KK
Sbjct: 266 DLLIRKTVTELIATLAAYNPDEFVSNYLHVCMLHLLNLLKK 306
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -1
Query: 157 PANVQALLDTILFTIA 110
PAN+QALL+ I+F IA
Sbjct: 517 PANLQALLNRIIFIIA 532
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 EALSPFLMRPLCWMPQHFLYMFS-VQDQQMCKHCWILFFSP*LEPSF 97
E+L F P+ Q Y S V+++ CW F ++PSF
Sbjct: 255 ESLKSFTTHPIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSF 301
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 82 CLFYIEIISTLVKNKSFTKY 23
C FY ++I T +K+FT Y
Sbjct: 213 CSFYAQVIKTWYSDKNFTLY 232
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 185 CCGIQQSGRIKKGESASN*GGDHQSVFMSQSTDIYTNLALEDWLYKNMDFTNH--HVMMV 358
CC + +G+I + S ++ + S YT A +WL+KN+ T H ++ +
Sbjct: 2407 CCVVNVNGKILVKDKLSRIYNENSDENILCSC-FYTG-ANSEWLHKNLFITGHPDGIIRI 2464
Query: 359 W 361
W
Sbjct: 2465 W 2465
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 454 CQSYFFFRK*WNIRLQPRILMSSNNHTWLISPHHHNMM 341
C + FFRK W + PR + N L S ++ +M
Sbjct: 39 CVFFCFFRKRWKVLYAPRTTIEGLNLPTLSSSYYKWLM 76
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 648 RYLVFVSDDKVLTFINS*LNAKTSEQCSLNQL 553
R + V DK+L F+N L + SE SL Q+
Sbjct: 334 RAMTVVLLDKLLAFVNERLKPELSEPLSLAQM 365
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 152 CWSCTENIYKKCCGIQQSGRIKKGESASN*GG 247
CW N Y CG++ GE+ + GG
Sbjct: 278 CWVDAPNSYNAGCGVENPSGPSYGEAFNKNGG 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,473
Number of Sequences: 5004
Number of extensions: 60814
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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